CALANGO: Comparative Analysis with Annotation-Based Genomic Components (original) (raw)
A first-principle, phylogeny-aware comparative genomics tool for investigating associations between terms used to annotate genomic components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative or rank variables such as number of cell types, genome size, or density of specific genomic elements. See the project website for more information, documentation and examples, and <doi:10.1016/j.patter.2023.100728> for the full paper.
| Version: | 1.0.20 |
|---|---|
| Depends: | R (≥ 3.6.0) |
| Imports: | assertthat (≥ 0.2.1), pbmcapply (≥ 1.5.0), ape (≥ 5.3.0), rmarkdown (≥ 2.1.0), nlme (≥ 3.1.0), BiocManager (≥ 1.30.10), dendextend (≥ 1.15.2), heatmaply (≥ 1.1.0), ggplot2 (≥ 2.3.2), plotly (≥ 4.9.2), DT (≥ 0.13), htmltools (≥ 0.5.0), htmlwidgets (≥ 1.5.1), pkgdown (≥ 1.5.1), knitr (≥ 1.28) |
| Suggests: | AnnotationDbi, KEGGREST, GO.db |
| Published: | 2024-09-05 |
| DOI: | 10.32614/CRAN.package.CALANGO |
| Author: | Francisco Lobo [aut], Felipe Campelo [aut, cre], Jorge Augusto Hongo [aut], Giovanni Marques de Castro [aut], Gabriel Almeida [sad, dnc] |
| Maintainer: | Felipe Campelo |
| BugReports: | https://github.com/fcampelo/CALANGO/issues/ |
| License: | GPL-2 |
| URL: | https://labpackages.github.io/CALANGO/ |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | CALANGO citation info |
| Materials: | README NEWS |
| In views: | Phylogenetics |
| CRAN checks: | CALANGO results |
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