CSclone: Bayesian Nonparametric Modeling in R (original) (raw)
Germline and somatic locus data which contain the total read depth and B allele read depth using Bayesian model (Dirichlet Process) to cluster. Meanwhile, the cluster model can deal with the SNVs mutation and the CNAs mutation.
Version: | 1.0 |
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Depends: | lpSolve, mcclust, moments, DNAcopy, stats, R (≥ 2.10) |
Published: | 2016-11-12 |
DOI: | 10.32614/CRAN.package.CSclone |
Author: | Peter Wu |
Maintainer: | Peter Wu |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | no |
CRAN checks: | CSclone results |
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