DCLEAR: Distance Based Cell Lineage Reconstruction (original) (raw)
R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.
| Version: | 1.0.13 |
|---|---|
| Depends: | R (≥ 4.1.0), tensorflow (≥ 2.2.0) |
| Imports: | BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, rBayesianOptimization, rlang, BiocGenerics |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, rmarkdown, markdown |
| Published: | 2023-09-14 |
| DOI: | 10.32614/CRAN.package.DCLEAR |
| Author: | Il-Youp Kwak [aut, cre], Wuming Gong [aut] |
| Maintainer: | Il-Youp Kwak |
| License: | GPL-3 |
| URL: | https://github.com/ikwak2/DCLEAR |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | DCLEAR results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=DCLEARto link to this page.