MetaNet: Network Analysis for Omics Data (original) (raw)

Comprehensive network analysis package. Calculate correlation network fastly, accelerate lots of analysis by parallel computing. Support for multi-omics data, search sub-nets fluently. Handle bigger data, more than 10,000 nodes in each omics. Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. Provide comprehensive topology indexes calculation, including ecological network stability.

Version: 0.2.5
Depends: R (≥ 4.1.0), igraph (≥ 1.3.5)
Imports: graphics, dplyr, ggplot2 (≥ 3.2.0), ggnewscale, ggrepel, grDevices, magrittr, reshape2, stats, tibble, utils, pcutils (≥ 0.2.7), rlang
Suggests: pheatmap, vegan, stringr, foreach, doSNOW, snow, knitr, rmarkdown, prettydoc, Hmisc, gifski, ggraph, networkD3, ggpmisc, ggtree, treeio, circlize, jsonify, ggpubr, corrplot, philentropy, spatstat.random, spatstat.geom, sf
Published: 2025-04-10
DOI: 10.32614/CRAN.package.MetaNet
Author: Chen Peng ORCID iD [aut, cre]
Maintainer: Chen Peng
BugReports: https://github.com/Asa12138/MetaNet/issues
License: GPL-3
URL: https://github.com/Asa12138/MetaNet
NeedsCompilation: no
Materials: README NEWS
CRAN checks: MetaNet results

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