MetaNet: Network Analysis for Omics Data (original) (raw)
Comprehensive network analysis package. Calculate correlation network fastly, accelerate lots of analysis by parallel computing. Support for multi-omics data, search sub-nets fluently. Handle bigger data, more than 10,000 nodes in each omics. Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. Provide comprehensive topology indexes calculation, including ecological network stability.
Version: | 0.2.5 |
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Depends: | R (≥ 4.1.0), igraph (≥ 1.3.5) |
Imports: | graphics, dplyr, ggplot2 (≥ 3.2.0), ggnewscale, ggrepel, grDevices, magrittr, reshape2, stats, tibble, utils, pcutils (≥ 0.2.7), rlang |
Suggests: | pheatmap, vegan, stringr, foreach, doSNOW, snow, knitr, rmarkdown, prettydoc, Hmisc, gifski, ggraph, networkD3, ggpmisc, ggtree, treeio, circlize, jsonify, ggpubr, corrplot, philentropy, spatstat.random, spatstat.geom, sf |
Published: | 2025-04-10 |
DOI: | 10.32614/CRAN.package.MetaNet |
Author: | Chen Peng |
Maintainer: | Chen Peng |
BugReports: | https://github.com/Asa12138/MetaNet/issues |
License: | GPL-3 |
URL: | https://github.com/Asa12138/MetaNet |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | MetaNet results |
Documentation:
Downloads:
Reverse dependencies:
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