NMF: Algorithms and Framework for Nonnegative Matrix Factorization (NMF) (original) (raw)
Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
| Version: | 0.28 |
|---|---|
| Depends: | R (≥ 3.0.0), methods, utils, registry, rngtools (≥ 1.2.3), cluster |
| Imports: | graphics, stats, stringr (≥ 1.0.0), digest, grid, grDevices, gridBase, colorspace, RColorBrewer, foreach, doParallel, ggplot2, reshape2, Biobase, codetools, BiocManager |
| Suggests: | fastICA, doMPI, bigmemory (≥ 4.2), synchronicity (≥ 1.3.2), corpcor, xtable, devtools, knitr, RUnit |
| Published: | 2024-08-22 |
| DOI: | 10.32614/CRAN.package.NMF |
| Author: | Renaud Gaujoux [aut], Cathal Seoighe [aut], Nicolas Sauwen [cre] |
| Maintainer: | Nicolas Sauwen <nicolas.sauwen at openanalytics.eu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://renozao.github.io/NMF/ |
| NeedsCompilation: | yes |
| Citation: | NMF citation info |
| Materials: | README |
| CRAN checks: | NMF results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: | fabisearch, funOmics, InterSIM, IntNMF, musicatk, MutationalPatterns, signeR, SomaticSignatures, SparseSignatures |
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| Reverse imports: | CARDspa, clusterExperiment, DBNMFrank, debCAM, funOmics, hNMF, MetabolSSMF, miRSM, pcaExplorer, projectR, SCdeconR, scITD, shattering, sigminer, SomaticSignatures, spectralAnalysis, SpNMF, SPOTlight |
| Reverse suggests: | AUCell, cola, crassmat, diceR, dimRed, Evacluster, iTOP, maftools, MAST, mia, mlr3pipelines, scone |
| Reverse enhances: | fdm2id |
Linking:
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