PSCBS: Analysis of Parent-Specific DNA Copy Numbers (original) (raw)
Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Version:
0.67.0
Depends:
R (≥ 3.2.0)
Imports:
R.methodsS3 (≥ 1.8.2), R.oo (≥ 1.25.0), R.utils (≥ 2.12.0), R.cache (≥ 0.16.0), matrixStats (≥ 0.62.0), aroma.light (≥ 2.4.0), DNAcopy (≥ 1.42.0), listenv (≥ 0.8.0), future (≥ 1.28.0), parallel, graphics, grDevices, stats, utils
Suggests:
R.rsp (≥ 0.45.0), R.devices (≥ 2.17.1), ggplot2 (≥ 3.2.1)
Published:
2024-02-17
DOI:
Author:
Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut], Frank E Harrell Jr [ctb] (Weighted quantile estimator adopted from Hmisc::wtd.quantile())
Maintainer:
Henrik Bengtsson
BugReports:
https://github.com/HenrikBengtsson/PSCBS/issues
License:
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:
https://github.com/HenrikBengtsson/PSCBS
NeedsCompilation:
no
Citation:
Materials:
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