copyseparator: Assembling Long Gene Copies from Short Read Data (original) (raw)
Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.
| Version: | 1.2.0 |
|---|---|
| Depends: | R (≥ 3.5.0) |
| Imports: | ape, seqinr, stringr, kmer, DECIPHER, beepr, Biostrings, grDevices, doParallel, foreach, parallel |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2022-11-25 |
| DOI: | 10.32614/CRAN.package.copyseparator |
| Author: | Lei Yang |
| Maintainer: | Lei Yang |
| BugReports: | https://github.com/LeiYang-Fish/copyseparator/issues |
| License: | GPL-2 |
| URL: | https://github.com/LeiYang-Fish/copyseparator |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | copyseparator results |
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