seqinr: Biological Sequences Retrieval and Analysis (original) (raw)
Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>.
| Version: | 4.2-36 |
|---|---|
| Depends: | R (≥ 2.10.0) |
| Imports: | ade4, segmented |
| Published: | 2023-12-08 |
| DOI: | 10.32614/CRAN.package.seqinr |
| Author: | Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb] |
| Maintainer: | Simon Penel <simon.penel at univ-lyon1.fr> |
| BugReports: | https://github.com/lbbe-software/seqinr/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://seqinr.r-forge.r-project.org/,https://github.com/lbbe-software/seqinr |
| NeedsCompilation: | yes |
| SystemRequirements: | zlib headers and library. |
| Citation: | seqinr citation info |
| Materials: | |
| In views: | Omics |
| CRAN checks: | seqinr results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: | Autoplotprotein, DCODE, EnsCat, GeneGA, LSPFP, MethTargetedNGS, plotprotein, rnaCrosslinkOO, sangeranalyseR, SMM, specL |
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| Reverse imports: | adegenet, agvgd, alakazam, aLFQ, AllelicImbalance, AmyloGram, AnnotationBustR, appreci8R, artMS, beautier, CellBarcode, circRNAprofiler, cleanUpdTSeq, coil, copyseparator, CovidMutations, CRISPRseek, debar, deepredeff, drimmR, effectR, EnvNJ, EpiSemble, evobiR, GB5mcPred, GenomicSig, gkmSVM, gquad, HextractoR, hoardeR, IMMAN, insect, IntEREst, itol.toolkit, LncFinder, longreadvqs, MAGNAMWAR, metaCluster, methylscaper, MSA2dist, netmhc2pan, OpEnHiMR, openPrimeR, orthGS, prozor, PTXQC, RHybridFinder, seq2R, shazam, signalHsmm, sitePath, smmR, sscu, surfaltr, SynMut, vhcub, vivaldi, wavClusteR |
| Reverse suggests: | biomartr, ChIPpeakAnno, cubfits, dartR, dartR.base, disprose, file2meco, idpr, midasHLA, MiRaGE, MiscMetabar, MMAPPR2data, msa, phangorn, ProteoDisco, RScelestial, tidysq, vhica |
| Reverse enhances: | spgs |
Linking:
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