CAFASP (original) (raw)
CAFASP, or the Critical Assessment of Fully Automated Structure Prediction, is a large-scale blind experiment in protein structure prediction that studies the performance of automated structure prediction webservers in homology modeling, fold recognition, and ab initio prediction of protein tertiary structures based only on amino acid sequence. The experiment runs once every two years in parallel with CASP, which focuses on predictions that incorporate human intervention and expertise. Compared to related benchmarking techniques LiveBench and EVA, which run weekly against newly solved protein structures deposited in the Protein Data Bank, CAFASP generates much less data, but has the advantage of producing predictions that are directly comparable to those produced by human prediction expert
| Property | Value |
|---|---|
| dbo:abstract | CAFASP, or the Critical Assessment of Fully Automated Structure Prediction, is a large-scale blind experiment in protein structure prediction that studies the performance of automated structure prediction webservers in homology modeling, fold recognition, and ab initio prediction of protein tertiary structures based only on amino acid sequence. The experiment runs once every two years in parallel with CASP, which focuses on predictions that incorporate human intervention and expertise. Compared to related benchmarking techniques LiveBench and EVA, which run weekly against newly solved protein structures deposited in the Protein Data Bank, CAFASP generates much less data, but has the advantage of producing predictions that are directly comparable to those produced by human prediction experts. Recently CAFASP has been run essentially integrated into the CASP results rather than as a separate experiment. (en) |
| dbo:wikiPageExternalLink | http://predictioncenter.org/ http://www.cs.bgu.ac.il/~dfischer/CAFASP4/ http://www.cs.bgu.ac.il/~dfischer/CAFASP5/ |
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| dbo:wikiPageLength | 2263 (xsd:nonNegativeInteger) |
| dbo:wikiPageRevisionID | 872077452 (xsd:integer) |
| dbo:wikiPageWikiLink | dbr:EVA_(benchmark) dbr:Protein_structure_prediction dbc:Bioinformatics dbr:Protein_Data_Bank dbr:CASP dbc:Protein_methods dbr:Homology_modeling dbr:Tertiary_structure dbr:LiveBench dbr:Amino_acid_sequence dbr:Fold_recognition |
| dbp:wikiPageUsesTemplate | dbt:Reflist dbt:Bioinformatics-stub |
| dcterms:subject | dbc:Bioinformatics dbc:Protein_methods |
| gold:hypernym | dbr:Experiment |
| rdf:type | yago:Ability105616246 yago:Abstraction100002137 yago:Cognition100023271 yago:Know-how105616786 yago:Method105660268 yago:PsychologicalFeature100023100 dbo:Organisation yago:WikicatProteinMethods |
| rdfs:comment | CAFASP, or the Critical Assessment of Fully Automated Structure Prediction, is a large-scale blind experiment in protein structure prediction that studies the performance of automated structure prediction webservers in homology modeling, fold recognition, and ab initio prediction of protein tertiary structures based only on amino acid sequence. The experiment runs once every two years in parallel with CASP, which focuses on predictions that incorporate human intervention and expertise. Compared to related benchmarking techniques LiveBench and EVA, which run weekly against newly solved protein structures deposited in the Protein Data Bank, CAFASP generates much less data, but has the advantage of producing predictions that are directly comparable to those produced by human prediction expert (en) |
| rdfs:label | CAFASP (en) |
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| prov:wasDerivedFrom | wikipedia-en:CAFASP?oldid=872077452&ns=0 |
| foaf:isPrimaryTopicOf | wikipedia-en:CAFASP |
| is dbo:wikiPageWikiLink of | dbr:Homology_modeling dbr:RAPTOR_(software) dbr:LiveBench |
| is foaf:primaryTopic of | wikipedia-en:CAFASP |