MetaboLights (original) (raw)
MetaboLights is a data repository founded in 2012 for cross-species and cross-platform metabolomic studies that provides primary research data and meta data for metabolomic studies as well as a knowledge base for properties of individual metabolites.The database is maintained by the European Bioinformatics Institute (EMBL-EBI) and the development is funded by Biotechnology and Biological Sciences Research Council (BBSRC). As of July 2018, the MetaboLights browse functionality consists of 383 studies, two analytical platforms, NMR spectroscopy and mass spectrometry.
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| dbo:abstract | MetaboLights is a data repository founded in 2012 for cross-species and cross-platform metabolomic studies that provides primary research data and meta data for metabolomic studies as well as a knowledge base for properties of individual metabolites.The database is maintained by the European Bioinformatics Institute (EMBL-EBI) and the development is funded by Biotechnology and Biological Sciences Research Council (BBSRC). As of July 2018, the MetaboLights browse functionality consists of 383 studies, two analytical platforms, NMR spectroscopy and mass spectrometry. Semantic annotation is based on various ontologies and controlled vocabularies, including the BRENDA tissue ontology and the NCBI taxonomy. The metabolite structure data is linked to chemical databases, including ChemSpider, PubChem, and ChEBI.Links to metabolite databases, however, seem to be missing. MetaboLights consists of two components: * a repository, that enables the metabolomic community to share experimental findings, data and protocols for any metabolomic study. (Fig. 1-2) * a reference layer of individual metabolite compounds and their reference spectra including additional information on their biological roles, locations, concentrations and raw data from metabolomic experiments. (Fig. 3) (en) |
| dbo:thumbnail | wiki-commons:Special:FilePath/Protocol.png?width=300 |
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| dbo:wikiPageWikiLink | dbr:Scientific_journal dbr:Scientific_method dbr:NMR dbr:Nature_Publishing_Group dbr:Metabolite dbr:Metabolomics dbr:Biotechnology_and_Biological_Sciences_Research_Council dbr:Mass_spectrometry dbr:PubChem dbr:NMR_spectroscopy dbr:ChemSpider dbr:Data_sharing dbc:Biological_databases dbc:Science_and_technology_in_Cambridgeshire dbr:European_Bioinformatics_Institute dbr:European_Molecular_Biology_Laboratory dbr:File:Metabolite_Page.png dbr:BRENDA_tissue_ontology dbc:Scientific_databases dbc:South_Cambridgeshire_District dbr:ChEBI dbr:Metabolites dbr:Metadata dbr:National_Center_for_Biotechnology_Information dbr:Ontologies dbr:Semantic dbr:File:Protocol.png dbr:Species dbr:Scientific_Data_(journal) dbr:Raw_data dbr:EMBO_Journal dbr:ISA-TAB |
| dbp:center | dbr:European_Molecular_Biology_Laboratory |
| dbp:curation | Manually curated (en) |
| dbp:description | Metabolomics database (en) |
| dbp:download | http://www.ebi.ac.uk/metabolights/download |
| dbp:frequency | live (en) |
| dbp:laboratory | European Bioinformatics Institute (en) |
| dbp:pmid | 23109552 (xsd:integer) |
| dbp:scope | metabolites from different species, metabolite structure, chemical properties, synonyms, experimental protocols, taxonomy, reactions, pathways, NMR spectra, mass spectra (en) |
| dbp:url | http://www.ebi.ac.uk/metabolights/ |
| dbp:webapp | http://www.ebi.ac.uk/metabolights/ |
| dbp:wikiPageUsesTemplate | dbt:Infobox_biodatabase dbt:Flagicon dbt:Reflist |
| dc:description | Metabolomics database |
| dct:subject | dbc:Biological_databases dbc:Science_and_technology_in_Cambridgeshire dbc:Scientific_databases dbc:South_Cambridgeshire_District |
| gold:hypernym | dbr:Repository |
| rdf:type | owl:Thing schema:CreativeWork dbo:Work wikidata:Q386724 dbo:Database dul:InformationObject dbo:BiologicalDatabase |
| rdfs:comment | MetaboLights is a data repository founded in 2012 for cross-species and cross-platform metabolomic studies that provides primary research data and meta data for metabolomic studies as well as a knowledge base for properties of individual metabolites.The database is maintained by the European Bioinformatics Institute (EMBL-EBI) and the development is funded by Biotechnology and Biological Sciences Research Council (BBSRC). As of July 2018, the MetaboLights browse functionality consists of 383 studies, two analytical platforms, NMR spectroscopy and mass spectrometry. (en) |
| rdfs:label | MetaboLights (en) |
| owl:sameAs | freebase:MetaboLights wikidata:MetaboLights https://global.dbpedia.org/id/2GvpE |
| prov:wasDerivedFrom | wikipedia-en:MetaboLights?oldid=1073064819&ns=0 |
| foaf:depiction | wiki-commons:Special:FilePath/Metabolite_Page.png wiki-commons:Special:FilePath/Protocol.png |
| foaf:homepage | http://www.ebi.ac.uk/metabolights/ |
| foaf:isPrimaryTopicOf | wikipedia-en:MetaboLights |
| is dbo:wikiPageWikiLink of | dbr:Oncometabolism dbr:ChEBI |
| is foaf:primaryTopic of | wikipedia-en:MetaboLights |
