PHOSIDA (original) (raw)
The PHOsphorylation SIte DAtabase PHOSIDA integrates thousands of high-confidence in vivo phosphosites identified in various species on the basis of mass spectrometry technology. For each phosphosite, PHOSIDA lists matching kinase motifs, predicted secondary structures, conservation patterns, and its dynamic regulation upon stimulus or other treatments such as kinase inhibition, for example. It includes of various organisms ranging from eukaryotes such as human and yeast to bacteria such as Escherichia coli and Lactococcus lactis. Even the of an archaean organism, namely Halobacterium salinarium, is available. The integration of phosphoproteomes identified in organisms, which cover the phylogenetic tree representatively, enables to examine phosphorylation events from a global point of vi
| Property | Value |
|---|---|
| dbo:abstract | The PHOsphorylation SIte DAtabase PHOSIDA integrates thousands of high-confidence in vivo phosphosites identified in various species on the basis of mass spectrometry technology. For each phosphosite, PHOSIDA lists matching kinase motifs, predicted secondary structures, conservation patterns, and its dynamic regulation upon stimulus or other treatments such as kinase inhibition, for example. It includes of various organisms ranging from eukaryotes such as human and yeast to bacteria such as Escherichia coli and Lactococcus lactis. Even the of an archaean organism, namely Halobacterium salinarium, is available. The integration of phosphoproteomes identified in organisms, which cover the phylogenetic tree representatively, enables to examine phosphorylation events from a global point of view including conservation and evolutionary preservation in time. Moreover, PHOSIDA also predicts phosphosites on the basis of support vector machines. (en) |
| dbo:thumbnail | wiki-commons:Special:FilePath/Database.png?width=300 |
| dbo:title | PHOSIDA (en) |
| dbo:wikiPageExternalLink | http://www.phosida.com |
| dbo:wikiPageID | 17443233 (xsd:integer) |
| dbo:wikiPageLength | 2287 (xsd:nonNegativeInteger) |
| dbo:wikiPageRevisionID | 1085352808 (xsd:integer) |
| dbo:wikiPageWikiLink | dbc:Chemical_databases dbc:Phosphorus dbr:In_vivo dbr:Mass_spectrometry dbc:Post-translational_modification dbr:Lactococcus_lactis dbr:Max_Planck_Institute_of_Biochemistry dbr:Bacteria dbc:Biological_databases dbr:Escherichia_coli dbr:Eukaryote dbr:Kinase dbr:Halobacterium_salinarium dbr:Support_vector_machine dbr:Yeast dbr:File:Database.png dbr:Phosphorylation dbr:Posttranslational_modification dbr:Phosphoproteome |
| dbp:author | Florian Gnad (en) |
| dbp:center | dbr:Max_Planck_Institute_of_Biochemistry |
| dbp:citation | Gnad & al. (en) |
| dbp:description | posttranslational modification database. (en) |
| dbp:laboratory | Department of Proteomics and Signal Transduction (en) |
| dbp:logo | dbr:File:Database.png |
| dbp:released | 2009 (xsd:integer) |
| dbp:title | PHOSIDA (en) |
| dbp:url | http://www.phosida.com |
| dbp:wikiPageUsesTemplate | dbt:Infobox_biodatabase dbt:Reflist |
| dc:description | posttranslational modificationdatabase. |
| dcterms:subject | dbc:Chemical_databases dbc:Phosphorus dbc:Post-translational_modification dbc:Biological_databases |
| rdf:type | owl:Thing schema:CreativeWork dbo:Work wikidata:Q386724 dbo:Database dul:InformationObject dbo:BiologicalDatabase |
| rdfs:comment | The PHOsphorylation SIte DAtabase PHOSIDA integrates thousands of high-confidence in vivo phosphosites identified in various species on the basis of mass spectrometry technology. For each phosphosite, PHOSIDA lists matching kinase motifs, predicted secondary structures, conservation patterns, and its dynamic regulation upon stimulus or other treatments such as kinase inhibition, for example. It includes of various organisms ranging from eukaryotes such as human and yeast to bacteria such as Escherichia coli and Lactococcus lactis. Even the of an archaean organism, namely Halobacterium salinarium, is available. The integration of phosphoproteomes identified in organisms, which cover the phylogenetic tree representatively, enables to examine phosphorylation events from a global point of vi (en) |
| rdfs:label | PHOSIDA (en) |
| owl:sameAs | wikidata:PHOSIDA https://global.dbpedia.org/id/4tscG |
| prov:wasDerivedFrom | wikipedia-en:PHOSIDA?oldid=1085352808&ns=0 |
| foaf:depiction | wiki-commons:Special:FilePath/Database.png |
| foaf:homepage | http://www.phosida.com |
| foaf:isPrimaryTopicOf | wikipedia-en:PHOSIDA |
| is dbo:wikiPageRedirects of | dbr:Phosida |
| is dbo:wikiPageWikiLink of | dbr:Phosida |
| is foaf:primaryTopic of | wikipedia-en:PHOSIDA |
