PML is induced by oncogenic ras and promotes premature senescence (original) (raw)

Genes Dev. 2000 Aug 15; 14(16): 2015–2027.

Gerardo Ferbeyre

1Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724 USA; 2Department of Biological Sciences, Columbia University, New York, New York 10027 USA

Elisa de Stanchina

1Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724 USA; 2Department of Biological Sciences, Columbia University, New York, New York 10027 USA

Emmanuelle Querido

1Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724 USA; 2Department of Biological Sciences, Columbia University, New York, New York 10027 USA

Nicole Baptiste

1Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724 USA; 2Department of Biological Sciences, Columbia University, New York, New York 10027 USA

Carol Prives

1Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724 USA; 2Department of Biological Sciences, Columbia University, New York, New York 10027 USA

Scott W. Lowe

1Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724 USA; 2Department of Biological Sciences, Columbia University, New York, New York 10027 USA

1Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724 USA; 2Department of Biological Sciences, Columbia University, New York, New York 10027 USA

3Corresponding author.

Received 2000 Jun 8; Accepted 2000 Jun 28.

Copyright © 2000, Cold Spring Harbor Laboratory Press

Abstract

Oncogenic ras provokes a senescent-like arrest in human diploid fibroblasts involving the Rb and p53 tumor suppressor pathways. To further characterize this response, we compared gene expression patterns between _ras_-arrested and quiescent IMR90 fibroblasts. One of the genes up-regulated during _ras_-induced arrest was promyelocytic leukemia (PML) protein, a potential tumor suppressor that encodes a component of nuclear structures known as promyelocytic oncogenic domains (PODs). PML levels increased during both _ras_-induced arrest and replicative senescence, leading to a dramatic increase in the size and number of PODs. Forced PML expression was sufficient to promote premature senescence. Like oncogenic ras, PML increased the levels of p16, hypophosphorylated Rb, phosphoserine-15 p53, and expression of p53 transcriptional targets. The fraction of Rb and p53 that colocalized with PML markedly increased during _ras_-induced arrest, and expression of PML alone forced p53 to the PODs. E1A abolished _PML_-induced arrest and prevented PML induction and p53 phosphorylation in response to oncogenic ras. These results imply that PML acts with Rb and p53 to promote _ras_-induced senescence and provide new insights into PML regulation and activity.

Keywords: senescence, ras, PML, p53, retinoblastoma protein, p16

Normal cells possess natural defenses that minimize the deleterious consequences of mutations, and these safeguards are often disrupted during multistep carcinogenesis. One such safeguard involves antiproliferative responses to excessive mitogenic signaling or oncogenic stress. For example, forced expression of the c-myc oncogene drives proliferation and simultaneously increases cellular susceptibility to apoptosis (Evan et al. 1992). Although the decision to proliferate or die can be influenced by additional factors, mutations that disable apoptosis allow uncontrolled proliferation and cooperate with myc during tumor development (Sherr and Weber 2000). Similarly, oncogenic ras promotes uncontrolled mitogenesis but when expressed in primary cells, provokes a permanent cell cycle arrest with features of senescence (Serrano et al. 1997). As a result, _ras_-induced arrest suppresses oncogenic transformation (Serrano et al. 1997; Lin et al. 1998; Hahn et al. 1999). Indeed, the necessity to override this arrest explains the cooperative interactions between ras and immortalizing mutations for transformation and may be important during tumor progression (Serrano et al. 1997; Hahn et al. 1999).

Senescence was originally defined by the observation that primary cells have a genetically determined limit to their proliferative capacity; after which they permanently arrest with characteristic features (Hayflick 1965; for review, see Campisi 1997). Owing to the “end-replication problem”, telomeres shorten during each cell division unless telomerase is expressed, and it appears that some aspect of telomere malfunction induces the senescent cell-cycle arrest (reviewed by Artandi and DePinho 2000). Although oncogenic ras does not promote telomere shortening (Shelton et al. submitted), the characteristics of _ras_-arrested cells are similar to cells undergoing replicative senescence. For example, cells arrested by serial passaging or oncogenic ras accumulate a senescence-associated β-galactosidase (SA-β-gal) (Dimri et al. 1995; Serrano et al. 1997). Moreover, these cells display similar patterns of gene expression that are markedly distinct from quiescent cells (Shelton et al. 1999). DNA damaging agents and other mitogenic oncogenes can also induce a senescent-like phenotype (Linke et al. 1997; Lin et al. 1998; Zhu et al. 1998; Chang et al. 1999; Dimri et al. 2000), implying that the process of cellular senescence reflects a common arrest program that is activated by diverse stimuli.

The most compelling link between _ras_-induced senescence and tumor suppression is their mutual dependence on tumor suppressor genes. For example, oncogenic ras induces p53, p15INK4b, p16INK4a, and p19ARF and leads to hypophosphorylation of Rb in several normal rodent and human cell types (Serrano et al. 1997; Palmero et al. 1998; Malumbres et al. 2000). Inactivation of either p53, p19ARF, or the INK4a/ARF locus bypasses _ras_-induced arrest in murine fibroblasts (Kamijo et al. 1997; Serrano et al. 1997; Palmero et al. 1998), and overexpression of these proteins is sufficient to induce senescence in some settings (Sugrue et al. 1997; Uhrbom et al. 1997; McConnell et al. 1998; Stott et al. 1998; Vogt et al. 1998; Wang et al. 1998a; Dimri et al. 2000). Viral oncoproteins that target the p53 and Rb pathways circumvent _ras_-induced arrest and cooperate with ras in oncogenic transformation (Serrano et al. 1997; Hahn et al. 1999; Morales et al. 1999). However, since the p53 and Rb pathways can also promote reversible checkpoint arrests, it is not obvious how senescence is maintained.

The mechanistic differences in the control of cellular senescence between human and murine cells have important ramifications for multistep carcinogenesis in each species. For example, species-specific differences in the control of replicative senescence involve variations in telomere length and dynamics, and this accounts for the unique requirement for telomerase activation during the transformation of human cells (Hahn et al. 1999). In contrast, species-specific differences in the control of premature senescence are unrelated to telomere biology but involve the relative contribution of the p53 pathway to the process (Serrano et al. 1997). Although oncogenic ras activates the p53 and Rb pathways in cells from both species, disruption of the p53 pathway is sufficient to override _ras_-induced arrest only in murine cells (Serrano et al. 1997; Palmero et al. 1998). As a consequence, murine cells lacking p53 are transformed by oncogenic ras, whereas inactivation of p53 in human cells does not rescue _ras_-induced arrest (Serrano et al. 1997). The only known activities that circumvent _ras_-induced arrest in human cells are viral oncoproteins such as adenovirus E1A, SV40 T antigen, papillomavirus E6/E7, and herpes virus LMP1 (Serrano et al. 1997; Hahn et al. 1999; Morales et al. 1999; Yang et al. 2000). These proteins typically disable both the p16/Rb and p53 growth arrest but may also have additional targets. Therefore, escape from _ras_-induced arrest in human cells requires the evasion of multiple tumor suppressor pathways, the nature of which remains to be fully elucidated.

In this study, we set out to gain insights into the control of _ras_-induced senescence in human cells. We hypothesized that the onset of senescence involves a gene expression program that, in response to an initiating stimulus, gives rise to the senescent phenotype. To investigate this program, we conducted a differential gene expression screen to identify genes that were specifically altered during _ras_-induced senescence but not in quiescent-like arrests. Using this approach, we identify PML as a component of the premature senescence program induced by oncogenic ras, and provide evidence that PML acts in senescence control, in part, by modulating the p53 and Rb tumor suppressor pathways.

Results

PML is induced during premature senescence

We screened a cDNA array to identify transcripts that were differentially expressed between _ras_-arrested and quiescent cells. Oncogenic ras was introduced into whole populations of IMR90 human diploid fibroblasts using retroviral-mediated gene transfer. Cells were recovered ten days post-infection, at which time they had arrested at subconfluent density and were highly positive for SA-β-gal activity (>95% positive). For comparison, a parallel culture of IMR90 cells was infected with a control “empty” vector, and the cells were grown to confluence where they arrested by contact. These cells were quiescent and not positive for SA-β-gal (<10%). Importantly, both _ras_-expressing and quiescent cell populations displayed a similar reduction in 3H-thymidine incorporation relative to exponentially growing controls (data not shown). 33P-labeled cDNA probes derived from mRNA from _ras_-arrested and quiescent cells were used to hybridize to Genome Systems cDNA arrays containing <18,000 known genes and expressed sequence tags (ESTs). Approximately 150 genes displayed greater than fivefold changes in two separate experiments. A series of genes known to be altered during replicative senescence and _ras_-induced arrest were also identified on the arrays (see Materials and Methods), although many of the differentially expressed genes were ESTs of unknown function.

Several known genes not previously associated with cellular senescence were differentially expressed in _ras_-arrested cells. One of the most interesting up-regulated genes was PML (7.5-fold increase) (Fig. ​1A). PML is a RING finger protein that localizes to large nuclear structures called promyelocytic oncogenic domains (PODs), ND10, or PML nuclear bodies (for review, see Zhong et al. 2000). PML was initially identified in acute promyelocytic leukemia (APL), in which it forms a reciprocal translocation t(15;17) with the RARα gene (de The et al. 1991; Goddard et al. 1991; Kakizuka et al. 1991; Kastner et al. 1992). In APL cells, the PML–RARα fusion protein disrupts the PODs, but addition of retinoic acid disables the fusion protein leading to reformation of the PODs and differentiation (Dyck et al. 1994; Weis et al. 1994). These studies imply that PML has tumor-suppressor activity, which is supported by the observation that mice lacking PML are tumor prone (Wang et al. 1998b). Although the biochemical action of PML is not known, it may function in transcription control by recruiting transcription factors to the PODs (LaMorte et al. 1998; Doucas et al. 1999).

An external file that holds a picture, illustration, etc. Object name is 9f1_C1TT.jpg

Oncogenic ras induces PML. (A) 33P-labeled cDNA probes were generated from quiescent (top) and _ras_-arrested (bottom) IMR90 fibroblasts and used to hybridize to GDA arrays. The portion of each array that contains the PML cDNA (n-5, see arrows) is shown; each cDNA is arrayed in duplicate and in different orientations (see www.genomesystems.com). Note that the cDNAs located at p-1 and 1–1 are controls that show equal intensity between the filters, whereas several other cDNAs in this section displayed up- or down-regulation in _ras_-arrested cells. (B) Northern blot analysis of PML and the senescence-related genes PAI-1, stromelysin, and IL-1β. IMR90 cells were infected with a control vector (V), oncogenic ras (R), or coinfected with E1A and oncogenic ras (ER). Alternatively, the cells were serially passaged until they had become senescent (S). Three major transcripts were visualized for PML (Goddard et al. 1991). The smaller of the two PAI-1 transcripts is the one whose up-regulation correlates better with senescence (Mu and Higgins 1995).

To further characterize the effects of oncogenic ras on PML, Northern blots were performed using probes against PML or a series of other senescence-related genes identified on our arrays. _ras_-arrested cells displayed a dramatic induction in several PML isoforms, and in the senescence-related markers PAI-1, stromelysin, and IL-1β (Fig. ​1B). IMR90 cells that underwent replicative senescence by serial passaging also induced PML. Consistent with a previous report (Shelton et al., unpubl.), the levels of stromelysin and IL-1β induced by oncogenic ras were more pronounced than during replicative senescence (Fig. ​1B), perhaps because Ras signaling directly activates these genes (Sistonen et al. 1989), or because the onset of senescence is more synchronous in _ras_-expressing cells. In any case, E1A, which overrides _ras_-induced arrest, abolished the upregulation of PML and the other senescence-associated markers in response to oncogenic ras.

PML oncogenic domains accumulate in response to oncogenic ras

PML is the defining component of nuclear structures known as promyelocytic oncogenic domains (PODs). These structures also contain Sp100, a target of autoantibodies in primary billiary cirrhosis and also up-regulated in our arrays from _ras_-arrested cells (data not shown). To examine the impact of oncogenic ras on POD numbers and distribution, we examined the expression of PML and Sp100 by indirect immunofluorescence using specific antibodies. Oncogenic Ras induced the accumulation of nuclear bodies containing both PML and Sp100 and a similar increase was observed in senescent cells (Fig. ​2A). To quantify this effect we conducted serial confocal microscopy on 100 randomly-chosen nuclei from control and _ras_-arrested cells (Fig. ​2B). Cells arrested by oncogenic ras were positive for SA-β-gal and displayed a striking increase in the number, size, and intensity of the PODs relative to controls (37 ± 13 vs. 12 ± 6, respectively; see Fig. ​2B). In contrast, cells arrested by serum-depletion, confluence, or forced p53 expression displayed low SA-β-gal activity and did not accumulate PODs (Fig. ​2C). Consistent with the Northern analysis presented in Figure ​1B, this increase in PODs in response to ras was not observed in cells expressing E1A (Fig. ​2D).

An external file that holds a picture, illustration, etc. Object name is 9f2_C4TT.jpg

PODs accumulate during premature senescence. PML and Sp100 localization in IMR90 cells was determined by indirect immunofluorescence using the PGM3 monoclonal antibody and the rabbit Anti-Sp100 polyclonal antibody AB1380. To facilitate comparison, photomicrographs of each cell were prepared using identical microscope settings and exposure times. In all instances, similar results were obtained with a polyclonal antibody directed to a different epitope of human PML (see Materials and Methods). (A) Confocal images of costaining for PML and Sp100 in cells expressing an empty vector (V), oncogenic ras (R) and senescent cells (S). (B) PML staining in a representative series of cells expressing an empty vector (V) and oncogenic ras (R). (C) PML staining in exponentially growing subconfluent (SC) cells was compared to cells arrested by confluence (C), low serum (LS), or enforced p53 expression. (D) PML staining in cells expressing E1A or coexpressing E1A and oncogenic ras. (E) PML staining of _ras_-expressing cells fixed 2, 4, 6, and 10 days after selection for cells expressing oncogenic ras. In panels B–D, the percentage of SA-β-gal positive cells in each population is indicated below each picture.

Expression of oncogenic ras in IMR90 cells produces an initial mitogenic burst followed by the onset of cellular senescence (Lin et al. 1998). During this mitogenic period (e.g., 2 days postselection), _ras_-expressing cells were not positive for SA-β-gal and contained few PODs (Fig. ​2E). However, PML bodies increased dramatically by day 4 and achieved a maximum at day 6 postinfection, co-incident with the time in which the cells underwent cell-cycle arrest and accumulated SA-β-gal (Fig. ​2E). Thus, the accumulation of PODs in response to oncogenic ras is coincident with the onset of premature senescence and appears unique to the senescent state.

PML induces premature senescence

PML can inhibit cellular proliferation in a variety of tumor cell lines (for review, see Melnick and Licht 1999), but the consequences of stable PML expression in normal cells are poorly characterized. Therefore, we introduced PML into IMR90 and IMR90 (E1A) populations by retroviral-mediated gene transfer and measured BrdU incorporation to estimate DNA synthesis (Fig. ​3B,C). By 10 days postinfection, forced PML expression in IMR90 cells produced a marked increase in POD numbers and intensity (40 ± 10; Fig. ​3A), as well as a fivefold reduction in the percentage of BrdU-positive cells, suggesting a potent growth arrest (Fig. ​3B). E1A-expressing cells displayed a similar increase in POD numbers (40 ± 5) and PML levels (data not shown), although the intensity of PML staining in PODs was reduced (Fig. ​3A). Moreover, in ∼25% of E1A-expressing cells, a substantial portion of the PML was localized to cytoplasmic conglomerates (Fig. ​3A, arrow). The percentage of BrdU-positive cells coexpressing PML and E1A was similar to that observed in cells expressing E1A alone (Fig. ​3B,C), implying that E1A completely abolished _PML_-induced arrest. Neither a PML mutant lacking the nuclear localization signal (PMLnls-) or the proline rich RING finger B-box-1 (PMLprb-) were able to promote cell cycle arrest in a 3H-thymidine incorporation assay (Fig. ​3D). Although these PML mutants were efficiently expressed, they were unable to induce formation of PODs (data not shown).

An external file that holds a picture, illustration, etc. Object name is 9f3a_C4TT.jpg

An external file that holds a picture, illustration, etc. Object name is 9f3c_L1TT.jpg

Impact of enforced PML expression on IMR90 cells. (A) IMR90 cells or IMR90 cells expressing E1A were infected with a control vector (V) or a virus expressing PML. PML staining and POD structure were visualized by indirect immunofluorescence using 4′6-diamidino-2-phenylindole (DAPI) staining to highlight the nucleus. Representative samples are shown. The arrow in the bottom right panel (E1A) points to a cytoplasmic PML conglomerate. (B) Cell morphology and in situ bromodeoxyuridine (BrdU) incorporation of control IMR90 cells or E1A-expressing IMR90 (E1A) cells infected with an empty vector (V), or viruses expressing oncogenic ras (R) or PML (P). The cells were pulsed with 10 μm BrdU for 2 hours a day 4 postselection, and BrdU incorporation was visualized using immunohistochemistry. (C) Quantitation of the results presented in B, showing the percentage of BrdU-positive nuclei. The average and standard deviation of three independent counts of 200 cells are shown. The abbreviations are as follows: (V) vector; (R) oncogenic ras; (P) PML; (E) E1A. (D) 3H-thymidine incorporation in cells containing a vector control (V), PML, oncogenic ras, or two PML mutants, PML Nls- and PML prb-. All cell populations were pulsed with 3H-thymidine for 24 hours, beginning 3 days postselection and the amount of incorporation was measured as described in Materials and Methods. Each point represents the mean ± standard deviation of data obtained in three independent experiments.

To further characterize PML-induced arrest, we used a growth assay that measures cell accumulation with time and examined the cell-cycle distribution of arrested cells following BrdU incorporation and flow cytometry. As expected, cells expressing oncogenic ras arrested after an initial period of growth (Fig. ​4A, circles). In contrast, _PML_-expressing cells grew slowly from the beginning and never reached the densities observed in _ras_-expressing cells (Fig. ​4A, squares). However, upon achieving arrest, cells expressing either oncogenic ras or PML displayed similar cell-cycle profiles, with a prominent G1/G2 arrest and loss of S phase DNA content (Fig. ​4B). PML induced the accumulation of SA-β-gal and the senescence-related form of PAI-1, although the intensity of each marker was not as intense as that produced by oncogenic ras (Fig. ​5). Thus, PML is sufficient to promote cell-cycle arrest and premature senescence. These results show that the biological properties of _ras_- and _PML_-arrested cells are highly similar and are consistent with a causal role for PML in _ras_-induced senescence.

An external file that holds a picture, illustration, etc. Object name is 9f4_C1TT.jpg

Characteristics of _PML_-induced arrest. (A) Growth curves of IMR90 cells containing empty vector (ς), oncogenic ras (λ) or PML (ν). Each value was determined in triplicate and normalized to the cell number at day 0, which corresponded to the time in which the cells finished drug selection. (B) Cell-cycle analysis of populations containing an empty vector, oncogenic ras or PML. The cells were pulsed with BrdU for 4 hours and analyzed for BrdU uptake and DNA content by two-color flow cytometry using a fluorescein isothiocyanate (FITC)-conjugated anti-BrdU antibody and propidium iodide (see Materials and Methods). The percentage of BrdU incorporation is indicated at the top of each panel.

An external file that holds a picture, illustration, etc. Object name is 9f5_C4TT.jpg

PML induces premature senescence. (A) IMR90 cell populations containing an empty vector (V), oncogenic ras (R) or PML were stained for SA-β-gal 6 days postselection. IMR90 cells that were serially passaged until senescent (S) are shown for comparison. Representative photomicrographs are shown; senescent-cells display a cytoplasmic blue stain. (B) Quantitation of data in A, showing the percentage of SA-β-gal positive cells. The data represent the mean ± standard deviation of three independent counts of 200 cells. (C) Expression of PAI-1 in the indicated populations was measured by Northern blot.

PML activates the Rb and the p53 tumor suppressor pathways

Previous studies demonstrate that the Rb and p53 pathways contribute to premature senescence induced by oncogenic ras (Serrano et al. 1997; Lin et al. 1998; Zhu et al. 1998; Morales et al. 1999). Rb is an active growth inhibitor in its hypophosphorylated form, leading to repression of E2F-responsive genes (Dyson 1998). Like cells arrested by oncogenic ras, cells arrested by PML expressed only hypophosphorylated Rb and no cyclin A, an E2F-dependent gene (Fig. ​6A) (Vigo et al. 1999). Although these changes can be passively associated with cell-cycle arrest, both oncogenic ras and PML also induced p16INK4a, a cyclin-dependent kinase inhibitor that actively prevents Rb phosphorylation and is not induced during most cell-cycle arrests (Serrano 1997). Hence, PML appears to actively engage the Rb tumor suppressor pathway.

An external file that holds a picture, illustration, etc. Object name is 9f6_C1TT.jpg

PML engages the Rb and p53 pathways. (A) The expression of Rb, cyclin A, p16, and p53 was measured by immunoblotting of lysates from IMR90 cells containing an empty vector (V), oncogenic ras (R) or PML (P). (B) Expression of p53 targets p21 and mdm2 by Northern blot analysis of total RNA extracted from the cells indicated above. (C) p53 phosphorylation on serine 15 was detected by immunoblotting using antibodies that specifically bind PS-15 p53. Lysates were prepared from cells infected with a empty vector (V), oncogenic ras (R), wild-type human p53 (p53), PML (P), or both the p53 and PML expressing viruses (p53 +P). The expression of total p53 was measured using a polyclonal antibody that recognizes all p53. The expression of the p53-target p21 is shown for comparison. Lysates were prepared from cells containing an empty vector (V), oncogenic ras (R), p53, PML (P) and a combination of p53 and PML (p53 +P). (D) The impact of E1A on PS-15 p53 was determined as in B, in which (ER) indicates cells co-expressing E1A and oncogenic ras.

p53 is activated by a variety of signals, some of which produce specific p53 posttranslational modifications (Giaccia and Kastan 1998; Prives 1998). For example, p53 phosphorylation on serine 15 accumulates following DNA damage and during replicative senescence (Shieh et al. 1997; Siliciano et al. 1997; Webley et al. 2000) and may activate p53 by compromising the Mdm2–p53 interaction and increasing the affinity of p53 for the CBP transcriptional coactivator (Lambert et al. 1998; Dumaz and Meek 1999). Consistent with previous reports (Serrano et al. 1997; Lin et al. 1998), oncogenic ras induced p53 protein, which corresponded to an increase in the p53 transcriptional targets p21 and Mdm2 (Fig. ​6A–C, cf. lanes V and R). Forced PML expression produced a similar effect, albeit to a lesser degree (Fig. ​6A–C, lane P). To determine whether oncogenic ras or PML promote p53 phosphorylation on serine 15, immunoblotting was performed using antibodies that specifically recognize phosphoserine-15 p53 (PS-15 p53). PS-15 p53 was barely detectable in control cells but was dramatically induced by oncogenic ras (Fig. ​6C, cf. lanes V and R). In contrast, induction of p53 protein by retroviral transduction of p53 produced no increase in PS-15 p53 (Fig. ​6C, lane p53). Although PML induced only a modest accumulation of p53 protein, this was accompanied by a substantially greater increase in PS-15 p53 (Fig. ​6C, cf. lanes V and P). Of note, the effect of PML on PS-15 was more apparent in cells expressing ectopic p53 (Fig. ​6C, p53 +P). Consistent with our previous results (de Stanchina et al. 1998), PS-15 p53 was not detected in IMR90 cells expressing E1A (Fig. ​6D, lane E). In fact, E1A suppressed the accumulation of PS-15 p53 in response to oncogenic ras (Fig. ​6D, lanes R and ER). This suppression may involve the E1A-p300/CBP interaction, for cells expressing E1A mutants unable to bind p300/CBP induced PS-15 p53 (data not shown). Therefore, like oncogenic ras, PML can activate the p53 tumor suppressor pathway in a manner that is modulated by E1A.

Oncogenic ras and PML promote Rb and p53 relocalization to the PODs

PML can modulate transcription by recruiting transcription factors to the PODs, and both Rb and p53 can localize to PODs under certain circumstances (Alcalay et al. 1998; Lain et al. 1999). To determine whether endogenous PML colocalizes with Rb during premature senescence, we conducted confocal laser scanning immunofluorescence microscopy on control (vector only) and _ras_-arrested cells using a PML monoclonal antibody and a polyclonal antibody that recognizes the carboxyl terminus of Rb. In both vector-control and _ras_-arrested cells, Rb was predominantly observed in small nuclear speckles that displayed no obvious overlap with the PODs (Fig. ​7A). However, a portion of Rb in _ras_-arrested cells formed larger nuclear bodies that colocalized with the PODs or were immediately adjacent to them. Although only a relatively small percentage of PODs contained Rb in _ras_-arrested cells, it was highly reproducible and represented a tenfold increase relative to that observed in controls (14% vs. 1%, respectively).

An external file that holds a picture, illustration, etc. Object name is 9f7a_C4TT.jpg

An external file that holds a picture, illustration, etc. Object name is 9f7b_C4TT.jpg

An external file that holds a picture, illustration, etc. Object name is 9f7c_C4TT.jpg

Colocalization of PML, Rb, and p53 by laser scanning confocal microscopy. (A) Representative images of IMR90 cells containing an empty vector (V) or oncogenic ras (R) costained with anti-pRb and anti-PML antibodies. (B) Representative images of IMR90 cells containing an empty vector (V) or oncogenic ras (R) costained with anti-p53 and anti-PML antibodies. (C) Representative images of cells expressing a p53-green fluorescent protein (GFP) fusion protein and either a control vector (V), oncogenic ras (R), or PML (P). In this series, p53 was localized by direct GFP fluorescence, whereas PML was localized using an anti-PML antibody.

To determine whether PML colocalized with p53 during _ras_-induced arrest, a similar series of experiments were performed using antibodies against PML and p53. Although p53 did not colocalize with PML in control cells, a striking colocalization of p53 and PML was observed in _ras_-arrested cells (Fig. ​7B). Only a subset of the endogenous p53 associated with the PODs, but each POD contained p53. To confirm and extend this result, IMR90 cells were coinfected with retroviruses expressing a p53-GFP fusion protein and retroviruses expressing either oncogenic ras or PML. Upon the induction of premature senescence, the localization of p53 and PML were determined by confocal fluorescence microscopy using GFP or antibodies against PML. As expected, p53-GFP was expressed in the nucleus of control (vector only) cells and oncogenic ras promoted colocalization of a subset of GFP with PML (Fig. ​7C). Virtually all of the p53-GFP colocalized with the PODs in _PML_-arrested cells, implying that PML can force p53 re-localization to the PODs. The fact that both oncogenic ras and PML can promote relocalization of p53 to the PODs is consistent with a role for PML in _ras_-induced arrest and may explain how PML activates p53.

Discussion

PML contributes to premature senescence

Expression of oncogenic ras in human diploid fibroblasts triggers a premature senescence program that limits the promitogenic consequences of excessive Ras signaling. Using a differential gene expression screen, we identified the candidate tumor suppressor PML as a gene up-regulated during _ras_-induced senescence. Several observations suggest that PML actively contributes to this program. First, the onset of cellular senescence is accompanied by a striking increase in size and number of the PODs. This increase is relatively specific for cells undergoing senescence, because PODs accumulate during replicative senescence (see also, Jiang and Ringertz 1997) but not during the nonsenescent arrests induced by growth factor withdrawal, contact inhibition, or p53 overexpression. Second, like oncogenic ras, forced expression of PML is sufficient to induce premature senescence. Hence, PML induction is not simply associated with the senescent state. Third, as in _ras_-induced arrest, _PML_-induced arrest is accompanied by engagement of the Rb and p53 tumor suppressor pathways. Both oncogenic ras and PML induce p16, Rb hypophosphorylation, PS-15 p53, and p53 transcriptional targets. Fourth, oncogenic ras promotes the relocalization of a subset of Rb and p53 to the PODs. Finally, E1A, which overrides _ras_-induced arrest and disables the Rb and p53 arrest programs, prevents PML induction by oncogenic ras and abolishes _PML_-induced arrest. Thus, PML can promote premature senescence and may modify the tumor-suppressor effects of the Rb and p53 pathways.

Regulation of PML

Oncogenic ras induces premature senescence, in part, by constitutively signaling through the MAP Kinase (MAPK) cascade (Lin et al. 1998; Zhu et al. 1998). MAPK signaling also contributes to PML induction, because the size and intensity of the PODs increased after expression of oncogenic raf (data not shown). However, PML bodies are not induced immediately in response to oncogenic ras but appear after an initial mitogenic burst coincident with senescence. These data suggest that Ras signaling to PML is indirect and, like the senescence process itself, reflects a cellular response to some aspect of inappropriate mitogenic signaling. Of note, interferon also induces PML and other components of the PODs (Guldner et al. 1992; Korioth et al. 1995; Lavau et al. 1995; Stadler et al. 1995). Several additional interferon-responsive genes were induced by oncogenic ras on our cDNA arrays, including Sp100, which encodes another POD component (see Fig. ​2A)(Guldner et al. 1992). These data raise the possibility that components of the interferon signal transduction program contribute to _ras_-induced arrest. Consistent with this view, E1A interferes with both _ras_-induced arrest and interferon signaling (Gutch and Reich 1991; Bhattacharya et al. 1996; Serrano et al 1997), and disruption of the interferon response factor-1 cooperates with oncogenic ras during transformation and tumorigenesis (Tanaka et al. 1994; Nozawa et al. 1999).

PML action in premature senescence

How PML acts in tumor suppression is not firmly established. Previous studies using human tumor cells or knockout mice suggest that PML can influence cell-cycle control, differentiation, and apoptosis (Dyck et al. 1994; Weis et al. 1994; Wang et al. 1998a,b). None of these PML activities are well understood at the mechanistic level, but it is often assumed that PML acts by recruiting other proteins to the PODs (Zhong et al. 2000). The ability of PML to form PODs appears essential for its prosenescence activity, because two PML mutants unable to form PODs are unable to induce premature senescence. Our results indicate that PML contributes to the control of cellular senescence, in part, by modulating the Rb and p53 tumor suppressor pathways (Fig. ​8). This, too, may involve the ability of PML to recruit Rb and p53 to the PODs, because the fraction of p53 and Rb that colocalizes with PODs dramatically increases in response to oncogenic ras. In principle, these structures might recruit Rb and p53 to sites of transcriptional repression or activation, respectively, or they might act as transient docking sites to assemble the active transcription complexes that then migrate to other areas in the nucleus.

An external file that holds a picture, illustration, etc. Object name is 9f8_L1TT.jpg

A tumor suppressor network is activated by oncogenic ras and inhibited by E1A in human diploid fibroblasts. Expression of oncogenic ras in human diploid fibroblasts induces first uncontrolled proliferation and then a permanent cell-cycle arrest with characteristics of cellular senescence. The process involves the mitogen-associated protein (MAP) kinase pathway (Lin et al. 1998) and the tumor suppressors p53, p16, Rb (Serrano et al. 1997) and PML (this paper). PML modulates both the Rb and p53 pathways but may have additional activities. Lesions that alter individual tumor suppressors in isolation do not override _ras_-induced arrest (Serrano et al. 1997; Morales et al. 1999). However, E1A disables multiple tumor-suppressor pathways and, hence, overrides _ras_-induced arrest (see bars).

Although our data show that PML can engage the Rb and p53 pathways, they do not show an absolute requirement for either pathway in the arrest; nor do they rule out the possibility that PML has additional effects (Fig. ​8). Hence, inactivation of either pathway alone is unable to override premature senescence (data not shown; Serrano et al. 1997). Furthermore, it is possible that PML itself is not required for premature senescence, because all attempts to disable PML function using antisense inhibition or putative dominant-negative proteins were unable to override _ras_-induced arrest (data not shown). We suspect that in human cells inactivation of both the Rb and p53 pathways is required to circumvent _PML_-induced arrest. E1A abolishes the Rb pathway by binding Rb (Whyte et al. 1988) and interferes with the p53 cell-cycle arrest checkpoint (Lowe et al. 1993), perhaps through the E1A-p300/CBP interaction (Lill et al. 1997). Thus, E1A interferes with both the p53 and Rb growth arrest pathways and abrogates _ras_- and _PML_-induced arrest (Fig. ​3; see also Serrano et al. 1997). Nevertheless, E1A may also interfere with an Rb- and p53-independent activity of PML.

Together, our data indicate that the control of premature senescence in human cells involves a tumor-suppressor network rather than a single antiproliferative pathway (Fig. ​8). This tight control of _ras_-induced senescence in human cells is in contrast to the more relaxed control observed in murine cells, in which induction of _ras_-induced arrest depends strictly on the ARF-p53 pathway (Serrano et al. 1997; Palmero et al. 1998). Interestingly, in MEFs, oncogenic ras induces PML in a p53-dependent manner, and p53 is required for _PML_-induced arrest (E. Querido and S.W.Lowe, unpubl.). This observation is reminiscent of the ability of E1A to prevent both PML accumulation and _PML_-induced arrest and suggests that PML may operate in a positive-feedback loop that ultimately leads to a permanent cell-cycle arrest. We suspect that the more stringent control of premature senescence in human cells relates to the more prominent role of the Rb pathway. Accordingly, disruption of p53 alone immortalizes rodent cells, whereas the ability of certain viral oncoproteins to evade replicative senescence in human cells depends, in part, on their ability to bind Rb (Morales et al. 1999).

Implications for p53 regulation and activity

Oncogenic ras induces p53 levels and activity, in part, through the MAPK cascade (Lin et al. 1998). The data presented here imply that PML contributes to p53 activation, perhaps by recruiting p53 to the PODs (see above). Importantly, PML is unable to increase p53 levels to the extent produced by oncogenic ras, implying that another _ras_-inducible factor contributes to p53 activation. An obvious candidate for this activity is p14ARF, which is essential for p53 activation and _ras_-induced arrest in MEFs (Palmero et al. 1998). However, we have been unable to detect p14ARF induction by oncogenic ras in human diploid fibroblasts, raising the possibility that a different factor cooperates with PML to stabilize p53.

PML has a potent ability to force p53 to the PODs (Fig. ​7); this may result from a direct protein–protein interaction (G. del Sal, pers. comm.). Furthermore, like oncogenic ras, PML is able to promote the phosphorylation of p53 on serine 15. This effect is likely indirect, because PML is not known to possess kinase activity. SP-15 p53 displays an increased ability to associate with CBP (Lambert et al. 1998), a known POD component and p53 transcriptional coactivator (Lill et al. 1997; LaMorte et al. 1998). In principle, serine 15 phosphorylation might actively recruit p53 to the PODs or, alternatively, might occur as a consequence of p53 relocalization. In any case, the ability of E1A to suppress serine-15 phosphorylation correlates with its ability to circumvent _ras_-induced arrest. Interestingly, ectopic p53 expression at levels similar to that produced by oncogenic ras did not induce PS-15 p53 or senescence (Figs. ​3B,​6B), raising the provocative possibility that PML converts p53 into a senescence inducer.

Implications for multistep carcinogenesis

In summary, our results indicate that PML participates in the control of cellular senescence and further define the mechanism of _ras_-induced arrest. In human cells, this program involves multiple tumor-suppressor proteins that form a tumor-suppressor network of activities working on and reinforcing each other (Fig. ​8). As a consequence, growth suppression is tightly controlled and difficult to overcome. Although loss-of-function mutations in PML have not been described, PML dysfunction produced by the PML-RARα fusion protein promotes neoplasia, and PML inactivation produces tumor-prone mice (reviewed by Melnick and Licht 1999). Interestingly, _PML_-null mice are highly prone to papilloma formation following skin treatment with the carcinogen dimethylbenzanthracene and the tumor promoter 12-O-tetradecanoylphorbol-13-acetate (Wang et al. 1998b). Because this experimental paradigm inevitably produces ras mutations, these results imply that oncogenic ras and PML inactivation cooperate during tumor development. Together, these data establish a new activity of PML that may be important in tumor suppression.

Materials and methods

Cells and retroviruses

Normal human diploid fibroblasts IMR90 (PDL 22–25) expressed the murine ecotropic receptor to allow infection with murine retroviruses (Serrano et al. 1997). They were cultured in Dulbecco's modified Eagle medium (DMEM, GIBCO) supplemented with 10% fetal bovine serum (FBS, Hyclone, Utah) and 1% penicillin G/streptomycin sulfate (Sigma). Retroviral-mediated gene transfer was performed using Phoenix packaging cells as previously described (Serrano et al. 1997). Oncogenic ras (H-RasV12) was expressed using pBabe-ras or pWZL-ras (Serrano et al. 1997). PML (Mu et al. 1994), _PML_nls- and _PML_prb- (provided by Dr. K.S. Chang) were expressed using pLPC or pWZL Hygro (McCurrach et al. 1997). E1A was expressed using pLPC-12S (Samuelson and Lowe 1997). Human p53 was expressed using either pLPC-hp53 (McCurrach et al. 1997) or p53GFP (provided by G. Hannon). Infected cell populations were selected in either puromycin (2.5 μg/ml, 3 days) or hygromycin (100 μg/ml, 5 days).

Gene expression

Cells used for differential gene expression studies were prepared as follows: IMR90 cells were infected with retroviruses expressing oncogenic ras (Babe-ras) or an empty vector control (Babe-puro). Infected cell populations were selected in puromycin for 2 days. Three days postselection, the cells were subcultured 1:3 and cultured for another 7 days. Under these conditions, control populations become highly confluent and arrest by contact inhibition, whereas _ras_-expressing cells arrest at subconfluent density. In these test populations, cell-cycle arrest was confirmed by 3H-thymidine incorporation (see below), and senescence was confirmed by quantifying the percentage of cells that were positive for SA-β-gal (Dimri et al. 1995). mRNA was extracted from cells 10 days postselection (PolyATtract system 1000, Promega), and hybridization probes were prepared from 2.5 μg of mRNA by reverse transcription in the presence of 33P-αdCTP. Differential gene expression was assessed using Genome Discovery Arrays (GDA 1.2, Genome Systems) containing 18,376 cDNAs according to the manufacturers recommendations. Data were collected in a Molecular Dynamics PhosphorImager and the files were sent electronically to the manufacturer for analysis.

The overall quality of the data was estimated from the ability of our results to identify known changes induced during cellular senescence. The genes for PAI-1 (Goldstein et al. 1994; Mu and Higgins 1995), interleukin-1β (Kumar et al. 1993), stromelysin (Millis et al. 1992), p21 (Noda et al. 1994), and SOD (Chang et al. 2000) were all found up-regulated in _ras_-expressing cells. In addition, we detected similar changes in expression of nonoverlapping ESTs corresponding to the same gene. To validate specific changes, Northern blots were conducted using total RNA purified using RNAzol, (Biotecx Labs, Houston, Texas). Twenty μg of total RNA was fractionated on 1.2% formaldehyde–agarose gels and transferred to Hybond-N nylon membranes (Amersham) in 20× SSC (1× SSC is 0.15 m NaCl, 0.015 m sodium citrate at pH 7.0, and 0.1% SDS). Hybridization was performed at 65° C with 32P-labeled probes in 7% SDS, 0.25 m phosphate buffer (pH 7.4), 1% BSA and 1 mm EDTA. The membranes were washed twice at 65° C in 2× SSC for 10 min and once in 0.2× SSC for 30 min. Probes for PML, stromelysin, and IL-1β consisted of overlapping 60 mer oligonucleotides and were labeled using Klenow polymerase as described (Wong and Goeddel 1994). The sequences of these probes are available upon request. The probes for PAI-1 (Serrano et al. 1997) and 18S rRNA were labeled by random priming (T7 QuickPrime, Pharmacia Biotech, Inc.).

Cell proliferation

Cell proliferation was assessed using several assays. For growth curves, cells were plated at 2.5 × 104 per well in 12-well plates, and relative cell numbers were estimated at various times using a crystal violet incorporation assay as previously described (Serrano et al. 1997). To assess 3H-thymidine incorporation, cells were plated as above at day-3 postselection. After 12 hrs, the cells were pulsed for 24 hrs with 5 μCi/ml [methyl-3H]-thymidine (Amersham, 2Ci/mm), washed with PBS, and detached using trypsin. Incorporated 3H-thymidine was precipitated in the presence of ice-cold 10% TCA for 5 min, collected on glass-fiber filters (Filtermat, Wallac), and quantified by scintillation counting. To generate cell-cycle profiles of various populations, subconfluent cultures (day-4 postselection) were incubated in the presence of 10 μm BrdU (Amersham) for 4 hr, fixed, and prepared for flow cytometry as previously described (Lin et al. 1998). To visualize BrdU incorporation in situ, subconfluent cultures were incubated for 2 hrs in the presence of 10 μm BrdU, fixed, and nuclei incorporating BrdU were visualized by immunostaining using a commercially available kit (Cell proliferation kit, Amersham Pharmacia Biotech).

Protein expression

Immunoblots were performed from whole cell lysates as previously described (de Stanchina et al. 1998). 20 μg of protein/sample were resolved on SDS-PAGE gels and transferred to Immobilon-P membranes (Millipore). Antibodies against p53 (CM1, 1:2500, Novocastra), PS-15 p53 (16G8, 1:1000, New England Biolabs), p21 (C19, 1:500, Santa Cruz), Ras (OP23, 1:500, Calbiochem) p16 (DCS-50, Novocastra, 1:200), Rb (G3-245; Pharmigen, 1:1000), cyclin A (BF683, Santa Cruz, 1:500), Mdm2 (2A10, provided by A. Levine, 1:250), and α-tubulin (B-5-1-2, Sigma, 1:2000) were used as probes and detected using enhanced chemiluminescence (ECL, Amersham, or SuperSignal West Femtomaximum, Pierce). To detect PML, we used a monoclonal antibody (PGM-3, 1:500, Santa Cruz) raised against amino acids 37–51 or a rabbit polyclonal antibody (provided by K.S. Chang, 1:500) directed against amino acids 352–366.

Fluorescence microscopy

Cells were plated on coverslips for at least 24 hr and fixed using 4% paraformaldehyde in PBS for 15 min at room temperature. After washing with PBS, cells were permeablized for 5 min on ice with 0.2% Triton X-100 in PBS with 3% BSA (PBS/BSA). Then the cells were washed with PBS/BSA and incubated for 1 hr with different primary antibodies diluted in PBS/BSA, anti-p53 (CM1, 1:50, Novocastra), anti-Rb (aRB1C1, 1:50, provided by G. Klein), anti-PML (PGM-3, 1:200, Santa Cruz), anti-PML rabbit polyclonal (provided by K.S. Chang, 1:1000) and anti-Sp100 (AB1380, Chemicon Int., 1:500). After washing in PBS/BSA, cells were stained with FITC or Texas Red-conjugated secondary antibodies, (1:200) for 45 min at room temperature in a humidified chamber. Finally, cells were washed in PBS, stained with 4,6-diamidino-2-phenylindole (DAPI) at a concentration of 0.1 μg/ml in PBS and mounted on microscope slides. For standard fluorescence detection, we used a Zeiss immunofluorescence microscope (Axioscop 50, Thornwood, NY). Confocal images were obtained using a Zeiss LSM 510 confocal laser scanning microscope (Thornwood, NY) using simultaneous scans to avoid shift between the two optical channels. Data were collected with eightfold averaging at a resolution of 512 × 512 pixels using the LSM 510 software and exported for printing using Adobe Photoshop.

Acknowledgments

We thank V. Bourdeau for advice and extensive technical assistance; G. del Sal for discussing unpublished work; K.S. Chang, G. Hannon, G. Klein, and A. Levine for reagents; J. Hearing for assistance with the Molecular Dynamics PhosphorImager; D. Spector, B. Stillman, W. Herr, M. Hengartner, G. Hannon, and members of the Lowe Laboratory for helpful comments and discussion; K. Velinzon of the (CSHL) Flow Cytometry Shared Resource for technical assistance; T. Howard of the CSHL Microscopy Shared Resource for extensive advice and assistance; and M. Ockler, P. Renna, and J. Duffy of the CSHL Graphic Arts Shared Resource for assistance in preparing the figures. G.F. is a Tularik Fellow, E.dS. is a Human Frontier Science Fellow, and S.W.L. is a Rita Allen Foundation Scholar. This work was supported by grant AG-16379 from the National Institutes of Health.

The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked “advertisement” in accordance with 18 USC section 1734 solely to indicate this fact.

Note added in proof

Pearson et al. (Nature 406: 207–210) have recently shown that PML is required for _ras-_induced arrest in murine fibroblasts.

Footnotes

References

Articles from Genes & Development are provided here courtesy of Cold Spring Harbor Laboratory Press