BEDMatrix: Extract Genotypes from a PLINK .bed File (original) (raw)
A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
| Version: | 2.0.4 |
|---|---|
| Depends: | R (≥ 3.4.0) |
| Imports: | methods, crochet (≥ 2.3.0) |
| Suggests: | data.table, LinkedMatrix, tinytest |
| Published: | 2024-09-06 |
| DOI: | 10.32614/CRAN.package.BEDMatrix |
| Author: | Alexander Grueneberg [aut, cre], Gustavo de los Campos [ctb] |
| Maintainer: | Alexander Grueneberg |
| BugReports: | https://github.com/QuantGen/BEDMatrix/issues |
| License: | MIT + file |
| URL: | https://github.com/QuantGen/BEDMatrix |
| NeedsCompilation: | yes |
| Citation: | BEDMatrix citation info |
| Materials: | README, NEWS |
| CRAN checks: | BEDMatrix results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: | BGData, EBPRS |
|---|---|
| Reverse imports: | CoxMK, hirisplexr, jackstraw, mrMLM, phers |
| Reverse suggests: | gcatest, genio, groupedSurv, lfa, popkin, simtrait, symDMatrix |
Linking:
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