genio: Genetics Input/Output Functions (original) (raw)
Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.
| Version: | 1.1.2 |
|---|---|
| Imports: | readr (≥ 2.0.0), tibble, dplyr, Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | testthat, knitr, rmarkdown, BEDMatrix, snpStats, lobstr |
| Published: | 2023-01-06 |
| DOI: | 10.32614/CRAN.package.genio |
| Author: | Alejandro Ochoa  [aut, cre] |
| Maintainer: | Alejandro Ochoa <alejandro.ochoa at duke.edu> |
| BugReports: | https://github.com/OchoaLab/genio/issues |
| License: | GPL-3 |
| URL: | https://github.com/OchoaLab/genio |
| NeedsCompilation: | yes |
| Materials: | README, NEWS |
| CRAN checks: | genio results |
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