PTXQC: Quality Report Generation for MaxQuant and mzTab Results (original) (raw)
Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
Version:
1.1.3
Depends:
R (≥ 3.3.0)
Imports:
data.table, ggplot2 (≥ 3.4), ggdendro, grid, gridExtra, grDevices, gtable, htmlTable, knitr (≥ 1.10), magrittr, methods, plyr, R6, R6P, RColorBrewer, reshape2, rlang, rmarkdown, rmzqc (≥ 0.5.0), seqinr, stats, utils, UpSetR, xml2, yaml
Suggests:
Published:
2025-07-15
DOI:
Author:
Chris Bielow [aut, cre], Juliane Schmachtenberg [ctb], Swenja Wagner [ctb], Patricia Scheil [ctb], Tom Waschischek [ctb], Guido Mastrobuoni [dtc, rev]
Maintainer:
Chris Bielow <chris.bielow at bsc.fu-berlin.de>
BugReports:
https://github.com/cbielow/PTXQC/issues
License:
BSD_3_clause + file
URL:
https://github.com/cbielow/PTXQC
NeedsCompilation:
no
SystemRequirements:
pandoc (http://pandoc.org) for building Vignettes and output reports as HTML
Citation:
Materials:
In views:
CRAN checks: