SAMtool: Stock Assessment Methods Toolkit (original) (raw)
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
| Version: | 1.8.1 |
|---|---|
| Depends: | R (≥ 3.5.0), MSEtool (≥ 3.0.0) |
| Imports: | TMB (≥ 1.9.0), abind, dplyr, gplots, graphics, methods, pbapply, rmarkdown, snowfall, stats, utils, vars |
| LinkingTo: | TMB, RcppEigen |
| Suggests: | caret, corpcor, covr, extraDistr, ggplot2, Gmisc, knitr, mvtnorm, numDeriv, reshape2, shiny, testthat, tmbstan, usethis |
| Published: | 2025-04-28 |
| DOI: | 10.32614/CRAN.package.SAMtool |
| Author: | Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut] |
| Maintainer: | Quang Huynh |
| BugReports: | https://github.com/Blue-Matter/SAMtool/issues |
| License: | GPL-3 |
| URL: | https://openmse.com, https://samtool.openmse.com,https://github.com/Blue-Matter/SAMtool |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | SAMtool results |
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