TMB: Template Model Builder: A General Random Effect Tool Inspired by 'ADMB' (original) (raw)
With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.
| Version: | 1.9.16 |
|---|---|
| Depends: | R (≥ 3.0.0) |
| Imports: | graphics, methods, stats, utils, Matrix (≥ 1.0-12) |
| LinkingTo: | Matrix, RcppEigen |
| Suggests: | numDeriv, parallel |
| Published: | 2025-01-08 |
| DOI: | 10.32614/CRAN.package.TMB |
| Author: | Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Alex Forrence [ctb], Christoffer Moesgaard Albertsen [ctb], Cole Monnahan [ctb] |
| Maintainer: | Kasper Kristensen |
| BugReports: | https://github.com/kaskr/adcomp/issues |
| License: | GPL-2 |
| Copyright: | See the file COPYRIGHTS TMB copyright details |
| URL: | https://github.com/kaskr/adcomp/wiki |
| NeedsCompilation: | yes |
| Citation: | TMB citation info |
| Materials: | |
| In views: | Environmetrics, MixedModels |
| CRAN checks: | TMB results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: | ef, gllvm, hmmTMB, phylosem |
|---|---|
| Reverse imports: | ASMbook, bage, BayesGP, clustTMB, disaggregation, DLMtool, dsem, ecostate, epigrowthfit, fishmethods, FRK, gadget3, GeoAdjust, glmmTMB, LocalCop, marked, MLZ, mmrm, QFASA, RNAdecay, RTMB, SAMtool, sdmTMB, SPAS, SpatialGEV, ssdtools, stelfi, tmbstan, tramME, tsdistributions, tsgarch, unmarked |
| Reverse linking to: | bage, BayesGP, clustTMB, disaggregation, DLMtool, dsem, ef, epigrowthfit, fishmethods, FRK, GeoAdjust, gllvm, glmmTMB, hmmTMB, LocalCop, MLZ, mmrm, phylosem, QFASA, RTMB, SAMtool, sdmTMB, SPAS, SpatialGEV, ssdtools, stelfi, tmbstan, tramME, tsdistributions, tsgarch, unmarked |
| Reverse suggests: | adnuts, broom.mixed, covafillr, insight, MSEtool, parameters, sjPlot |
Linking:
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