doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.">

agvgd: An R Implementation of the 'Align-GVGD' Method (original) (raw)

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.

Version: 0.1.2
Depends: R (≥ 2.10)
Imports: crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs
Suggests: rmarkdown, covr, testthat (≥ 3.0.0)
Published: 2022-09-10
DOI: 10.32614/CRAN.package.agvgd
Author: Ramiro Magno ORCID iD [aut, cre], Isabel Duarte ORCID iD [aut], Ana-Teresa Maia ORCID iD [aut], CINTESIS [cph, fnd]
Maintainer: Ramiro Magno <ramiro.magno at gmail.com>
BugReports: https://github.com/maialab/agvgd/issues
License: MIT + file
URL: https://maialab.org/agvgd/, https://github.com/maialab/agvgd
NeedsCompilation: no
Materials: README, NEWS
In views: Omics
CRAN checks: agvgd results

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