https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'. 'babette' provides for an alternative workflow of using all these tools separately. This allows doing complex Bayesian phylogenetics easily and reproducibly from 'R'.">

babette: Control 'BEAST2' (original) (raw)

'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'. 'babette' provides for an alternative workflow of using all these tools separately. This allows doing complex Bayesian phylogenetics easily and reproducibly from 'R'.

Version:

2.3.4

Depends:

beautier (≥ 2.6.12), beastier (≥ 2.5), mauricer (≥ 2.5.2), R (≥ 3.5.0), tracerer

Imports:

phangorn, rlang (≥ 1.1.0), stringr, xml2

Suggests:

ape, ggplot2, knitr, lintr, nLTT, rappdirs, rmarkdown, spelling, testthat (≥ 2.1.0)

Published:

2024-06-25

DOI:

10.32614/CRAN.package.babette

Author:

Richèl J.C. BilderbeekORCID iD [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209), Jason Griffiths ORCID iD [ctb], Olivier Roy [ctb], Giovanni Laudanno [ctb]

Maintainer:

Richèl J.C. Bilderbeek

BugReports:

https://github.com/ropensci/babette/issues

License:

GPL-3

URL:

https://docs.ropensci.org/babette/ (website),https://github.com/ropensci/babette

NeedsCompilation:

no

SystemRequirements:

BEAST2 (https://www.beast2.org/)

Language:

en-US

Citation:

babette citation info

In views:

Phylogenetics

CRAN checks:

babette results