biclust: BiCluster Algorithms (original) (raw)
The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) <doi:10.1101/gr.648603>, plaid model (2005) <doi:10.1016/j.csda.2004.02.003>, xmotifs (2003) <doi:10.1142/9789812776303_0008> and bimax (2006) <doi:10.1093/bioinformatics/btl060>. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.
Version: | 2.0.3.1 |
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Depends: | R (≥ 2.10), MASS, grid, colorspace, lattice |
Imports: | methods, flexclust, additivityTests, tidyr, ggplot2 |
Suggests: | isa2 |
Published: | 2023-05-19 |
DOI: | 10.32614/CRAN.package.biclust |
Author: | Sebastian Kaiser, Rodrigo Santamaria, Tatsiana Khamiakova, Martin Sill, Roberto Theron, Luis Quintales, Friedrich Leisch, Ewoud De Troyer and Sami Leon. |
Maintainer: | Sebastian Kaiser <dr.sebastian.kaiser at gmail.com> |
License: | GPL-3 |
NeedsCompilation: | yes |
Materials: | |
In views: | Cluster |
CRAN checks: | biclust results |
Documentation:
Downloads:
Reverse dependencies:
Reverse depends: | iBBiG, QUBIC, RcmdrPlugin.BiclustGUI, runibic, s4vd, superbiclust |
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Reverse imports: | Anthropometry, BiBitR, biclustermd, FunCC, miRSM, mosbi, rqubic, sigQC |
Reverse suggests: | BcDiag, isa2, rattle |
Linking:
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