denim: Generate and Simulate Deterministic Compartmental Models (original) (raw)

R package to build and simulate deterministic compartmental models that can be non-Markovian. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()).

Version: 1.2.2
Depends: R (≥ 4.1.0)
Imports: Rcpp (≥ 1.0.6), colorspace, rlang, glue
LinkingTo: Rcpp, testthat
Suggests: covr, knitr, rmarkdown, testthat (≥ 3.0.0), waldo, xml2, deSolve, tidyverse, DiagrammeR
Published: 2025-08-21
DOI: 10.32614/CRAN.package.denim
Author: Thinh Ong ORCID iD [aut, cph], Anh Phan ORCID iD [aut, cre], Marc Choisy ORCID iD [aut], Niels Lohman [ctb], Bjoern Hoehrmann [ctb], Florian Loitsch [ctb], Ingo Berg [ctb]
Maintainer: Anh Phan
BugReports: https://github.com/thinhong/denim/issues
License: MIT + file
URL: https://drthinhong.com/denim/, https://github.com/thinhong/denim
NeedsCompilation: yes
Materials: README, NEWS
CRAN checks: denim results

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