detrendr: Detrend Images (original) (raw)
Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.
Version: | 0.6.15 |
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Depends: | R (≥ 3.1) |
Imports: | arrayhelpers (≥ 1.1.0), autothresholdr (≥ 1.3.11), checkmate (≥ 1.9.3), doParallel, dplyr, filesstrings (≥ 3.2.4), foreach, ijtiff (≥ 2.2), iterators, magrittr (≥ 1.5), parallel, plyr, purrr, Rcpp (≥ 1.0.10), RcppParallel (≥ 5.1.7), rlang (≥ 0.3.3), stringr (≥ 1.4), tools, withr (≥ 2.1) |
LinkingTo: | Rcpp (≥ 1.0.10), RcppParallel (≥ 5.1.7) |
Suggests: | abind, covr, ggplot2, glue (≥ 1.3.0), graphics, gridExtra, knitr, lattice, MASS, matrixStats, mgcv, pacman, R.utils, rmarkdown, spelling, testthat (≥ 3.0), tidyr |
Published: | 2023-03-04 |
DOI: | 10.32614/CRAN.package.detrendr |
Author: | Rory Nolan [aut, cre], Luis Alvarez [ctb, cph], Sergi Padilla-Parra [ctb, ths, cph] |
Maintainer: | Rory Nolan |
BugReports: | https://github.com/rorynolan/detrendr/issues |
License: | BSD_3_clause + file |
URL: | https://rorynolan.github.io/detrendr/,https://github.com/rorynolan/detrendr#readme |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Language: | en-US |
Citation: | detrendr citation info |
Materials: | README NEWS |
CRAN checks: | detrendr results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
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