hisse: Hidden State Speciation and Extinction (original) (raw)
Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Version:
2.1.11
Depends:
ape, deSolve, GenSA, subplex, nloptr
Imports:
parallel, phytools, data.table, igraph, methods, diversitree, paleotree, plotrix, geiger, phangorn, TreeSim, corHMM
Suggests:
testthat, knitr, rmarkdown, markdown
Published:
2023-02-11
DOI:
Author:
Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Daniel Caetano [aut], James Boyko [aut], Thais Vasconcelos [aut]
Maintainer:
Jeremy Beaulieu
License:
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:
yes
Citation:
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