doi:10.1111/2041-210X.13478>. It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>. The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013> on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).">

phyloregion: Biogeographic Regionalization and Macroecology (original) (raw)

Computational infrastructure for biogeography, community ecology, and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>. It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>. The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013> on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).

Version: 1.0.9
Depends: R (≥ 4.1.0)
Imports: ape, phangorn, Matrix, betapart, parallel, methods, colorspace, igraph, clustMixType, maptpx, terra, vegan, predicts, smoothr
Suggests: tinytest, knitr, rmarkdown, mapproj, survival, rJava, phyloseq, V8
Published: 2025-07-15
DOI: 10.32614/CRAN.package.phyloregion
Author: Barnabas H. Daru ORCID iD [aut, cre, cph], Piyal KarunarathneORCID iD [aut], Klaus Schliep ORCID iD [aut], Xiaobei Zhao [ctb], Albin Sandelin [ctb], Luciano Pataro [ctb]
Maintainer: Barnabas H. Daru
BugReports: https://github.com/darunabas/phyloregion/issues
License: AGPL-3
URL: https://github.com/darunabas/phyloregion,https://phyloregion.com/index.html
NeedsCompilation: no
Citation: phyloregion citation info
Materials: README, NEWS
In views: Phylogenetics
CRAN checks: phyloregion results

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