rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm (original) (raw)
Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.
Version: | 1.1.4 |
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Imports: | ape, purrr, utils, ggplot2, matrixStats, patchwork, methods |
Suggests: | knitr, rmarkdown, ggtree, phytools, testthat, formatR |
Published: | 2022-11-18 |
DOI: | 10.32614/CRAN.package.rhierbaps |
Author: | Gerry Tonkin-Hill [cre, aut] |
Maintainer: | Gerry Tonkin-Hill <g.tonkinhill at gmail.com> |
BugReports: | https://github.com/gtonkinhill/rhierbaps/issues |
License: | MIT + file |
URL: | https://github.com/gtonkinhill/rhierbaps |
NeedsCompilation: | no |
Citation: | rhierbaps citation info |
Materials: | README NEWS |
CRAN checks: | rhierbaps results |
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