ruminate: A Pharmacometrics Data Transformation and Analysis Tool (original) (raw)

Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results.

Version:

0.3.2

Depends:

R (≥ 4.2.0)

Imports:

digest, dplyr, DT, flextable, formods (≥ 0.2.0), ggplot2, onbrand (≥ 1.0.3), PKNCA (≥ 0.10.2), plotly, rhandsontable, rlang, shiny, shinyAce, shinyWidgets, stats, stringr, tidyr, utils, yaml, zip

Suggests:

babelmixr2, cli, clipr, gridExtra, knitr, nlmixr2lib (≥ 0.3.0), nonmem2rx, nlmixr2 (≥ 3.0.0), prompter, rmarkdown, readxl, rxode2 (≥ 3.0.0), shinybusy, shinydashboard, testthat (≥ 3.0.0), ubiquity

Published:

2025-11-04

DOI:

10.32614/CRAN.package.ruminate

Author:

John Harrold ORCID iD [aut, cre]

Maintainer:

John Harrold <john.m.harrold at gmail.com>

BugReports:

https://github.com/john-harrold/ruminate/issues

License:

BSD_2_clause + file

URL:

https://ruminate.ubiquity.tools/

NeedsCompilation:

no

Materials:

README, NEWS

In views:

Pharmacokinetics

CRAN checks:

ruminate results