tcpl: ToxCast Data Analysis Pipeline (original) (raw)

The ToxCast Data Analysis Pipeline ('tcpl') is an R package that manages, curve-fits, plots, and stores ToxCast data to populate its linked MySQL database, 'invitrodb'. The package was developed for the chemical screening data curated by the US EPA's Toxicity Forecaster (ToxCast) program, but 'tcpl' can be used to support diverse chemical screening efforts.

Version: 3.3.1
Depends: R (≥ 4.1.0)
Imports: data.table (≥ 1.15.0), DBI, RMariaDB, numDeriv, RColorBrewer, utils, stats, methods, graphics, grDevices, sqldf, dplyr, tidyr, plotly, tcplfit2, ggplot2 (≥ 3.5.2), gridExtra, stringr, rlang, ctxR (≥ 1.1.3), viridis, gt
Suggests: roxygen2, knitr, prettydoc, rmarkdown, htmlTable, testthat (≥ 3.0.0), reshape2, kableExtra, colorspace, magrittr, vdiffr, httptest, rmdformats, gtable
Published: 2025-10-17
DOI: 10.32614/CRAN.package.tcpl
Author: Dayne L Filer [aut], Jason Brown ORCID iD [ctb], Madison Feshuk ORCID iD [cre], Carter Thunes [ctb], Sarah E Davidson-FritzORCID iD [ctb], Kelly Carstens ORCID iD [ctb], Elizabeth Gilson [ctb], Lindsay Knupp [ctb], Lori Kolaczkowski [ctb], Ashley Ko [ctb], Zhihui Zhao [ctb], Kurt Dunham [ctb], Todd Zurlinden ORCID iD [ctb], Parth Kothiya [ctb], Woodrow R Setzer [ctb], Matthew T Martin [ctb, ths], Richard S Judson ORCID iD [ctb, ths], Katie Paul FriedmanORCID iD [ctb]
Maintainer: Madison Feshuk <feshuk.madison at epa.gov>
BugReports: https://github.com/USEPA/CompTox-ToxCast-tcpl/issues
License: MIT + file
URL: https://github.com/USEPA/CompTox-ToxCast-tcpl,https://www.epa.gov/comptox-tools/toxicity-forecasting-toxcast
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: tcpl results

Documentation:

Downloads:

Reverse dependencies:

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=tcplto link to this page.