arrayQuality (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seearrayQuality.
Assessing array quality on spotted arrays
Bioconductor version: 2.12
Functions for performing print-run and array level quality assessment.
Author: Agnes Paquet and Jean Yee Hwa Yang
Maintainer: Agnes Paquet
Citation (from within R, enter citation("arrayQuality")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("arrayQuality")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("arrayQuality")
| HTML | | arrayQuality User Manual | | ------------------------------------------------------------- | | ------------------------- | | HTML | | arrayQuality User's guide | | HTML | | customQuality | | HTML | | print-run qc | | PDF | | Reference Manual |
Details
| biocViews | Microarray, QualityControl, Software, TwoChannel, Visualization |
|---|---|
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | LGPL |
| Depends | R (>= 2.2.0) |
| Imports | graphics, grDevices, grid, gridBase, hexbin, limma, marray, methods, RColorBrewer, stats, utils |
| LinkingTo | |
| Suggests | mclust, MEEBOdata, HEEBOdata |
| SystemRequirements | |
| Enhances | |
| URL | http://arrays.ucsf.edu/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | arrayQuality_1.38.0.tar.gz |
|---|---|
| Windows Binary | arrayQuality_1.38.0.zip |
| Mac OS X 10.6 (Snow Leopard) | arrayQuality_1.38.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/arrayQuality/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/arrayQuality/ |
| Package Downloads Report | Download Stats |