marray (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seemarray.
Exploratory analysis for two-color spotted microarray data
Bioconductor version: 2.12
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
Author: Yee Hwa (Jean) Yang with contributions from Agnes Paquet and Sandrine Dudoit.
Maintainer: Yee Hwa (Jean) Yang
Citation (from within R, enter citation("marray")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("marray")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("marray")
| ExampleHTML.pdf | ||
|---|---|---|
| R Script | marray Normalization | |
| R Script | marray Overview | |
| R Script | marrayClasses Overview | |
| R Script | marrayClasses Tutorial (short) | |
| R Script | marrayInput Introduction | |
| R Script | marrayPlots Overview | |
| widget1.pdf | ||
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | Microarray, Preprocessing, Software, TwoChannel |
|---|---|
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | LGPL |
| Depends | R (>= 2.10.0), limma, methods |
| Imports | |
| LinkingTo | |
| Suggests | tkWidgets |
| SystemRequirements | |
| Enhances | |
| URL | http://www.maths.usyd.edu.au/u/jeany/ |
| Depends On Me | beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, MineICA, nnNorm, OLIN, stepNorm, TurboNorm |
| Imports Me | arrayQuality, nnNorm, OLIN, OLINgui, piano, plrs, sigaR, stepNorm, timecourse |
| Suggests Me | Agi4x44PreProcess, AgiMicroRna, DEGraph, Mfuzz |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | marray_1.38.0.tar.gz |
|---|---|
| Windows Binary | marray_1.38.0.zip |
| Mac OS X 10.6 (Snow Leopard) | marray_1.38.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/marray/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/marray/ |
| Package Downloads Report | Download Stats |