categoryCompare (development version) (original) (raw)

This is the development version of categoryCompare; for the stable release version, seecategoryCompare.

Meta-analysis of high-throughput experiments using feature annotations

Bioconductor version: Development (3.21)

Calculates significant annotations (categories) in each of two (or more) feature (i.e. gene) lists, determines the overlap between the annotations, and returns graphical and tabular data about the significant annotations and which combinations of feature lists the annotations were found to be significant. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).

Author: Robert M. Flight

Maintainer: Robert M. Flight

Citation (from within R, enter citation("categoryCompare")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("categoryCompare")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("categoryCompare")

Details

See More

Package Archives

Follow Installation instructions to use this package in your R session.