SimReg: Similarity Regression (original) (raw)
Similarity regression, evaluating the probability of association between sets of ontological terms and binary response vector. A no-association model is compared with one in which the log odds of a true response is linked to the semantic similarity between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 <doi:10.1016/j.ajhg.2016.01.008>.
| Version: | 3.4 |
|---|---|
| Depends: | R (≥ 3.0.0) |
| Imports: | Rcpp (≥ 0.11.1), ontologyIndex (≥ 2.0), ontologySimilarity (≥ 2.0), ontologyPlot |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-02-21 |
| DOI: | 10.32614/CRAN.package.SimReg |
| Author: | Daniel Greene |
| Maintainer: | Daniel Greene |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | SimReg results |
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