iTOP: Inferring the Topology of Omics Data (original) (raw)
Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).
Version: | 1.0.2 |
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Imports: | Matrix, corpcor |
Suggests: | knitr, rmarkdown, NMF, pcalg, Rgraphviz |
Published: | 2018-06-13 |
DOI: | 10.32614/CRAN.package.iTOP |
Author: | Nanne Aben |
Maintainer: | Nanne Aben <nanne.aben at gmail.com> |
License: | GPL-2 |
NeedsCompilation: | no |
Materials: | NEWS |
CRAN checks: | iTOP results |
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