Bioinformatics & Computational Biology 2010 (original) (raw)

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BIOCOMP 2010: Las Vegas, Nevada, USA

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  • Bioinformatics Database, Data Mining, and Pattern Discovery
  • Microarray, Gene Expression Analysis, and Gene Regulatory Networks
  • Protein Classification and Structure Prediction, Evolutionary, and Computational Molecular and Structural Biology
  • Comparative Sequence, Genome Analysis, Genome Assembly, and Genome Scale Computational Methods
  • Drug Targets, Immunotherapy, and Computational Methods for System and Micro Biology
  • Computational Methods for Filtering, Noise Cancellation, and Signal and Image Processing
  • Modelling, Simulation and Optimization of Biological Systems
  • Computational Methods, Computer-Assisted Medical Care and Service Systems, and Diagnostic Tools in Biomedical
  • Software Packages and Other Computational Topics Including in Bioinformatics
  • Algebraic Biology and Bioinformatics, ABB
  • Novel Algorithms for In-Silico Modeling Biological Networks and Generating Quantitative Predictions
  • Biological Networks, Feature Extraction, Gene Expressions, HIV, Software Tools, Modeling, Motifs, Proteomics, DNA, Data Analysis, Medicine, BCI/EEG, RNA, and Pattern Recognition

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    Hamid R. Arabnia, Quoc-Nam Tran, Rui Chang, Matthew He, Andy Marsh, Ashu M. G. Solo, Jack Y. Yang:
    International Conference on Bioinformatics & Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA, 2 Volumes. CSREA Press 2010, ISBN 1-60132-134-1

Bioinformatics Database, Data Mining, and Pattern Discovery

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    Adam W. Hoover, Anirud Singh, Stephanie Fishel-Brown, Eric Muth:
    Change Point Detection Via Sub-Gaussian Fitting. BIOCOMP 2010: 3-9
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    Mehdi Pirooznia, Fayaz Seifuddin, Jennifer Toolan Judy, Pamela B. Mahon, James B. Potash, Peter P. Zandi:
    Data Mining Approaches for Genome-Wide Association of Mood Disorders. BIOCOMP 2010: 10-16
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    William Hendrix, Andrea M. Rocha, Mark T. Elmore, Joe Trien, Nagiza F. Samatova:
    Discovery of Enriched Biological Motifs Using Knowledge Priors with Application to Biohydrogen Production. BIOCOMP 2010: 17-23
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    Dmitry Devetyarov, Martin Woodward, Nicholas Coldham, Muna Anjum, Alexander Gammerman:
    A New Bioinformatics Tool for Prediction with Confidence. BIOCOMP 2010: 24-28
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    Jing Hu:
    Identification of Transmembrane â-Barrel Proteins Using a K-Nearest Neighbor Method Based On Weighted Manhattan Distance. BIOCOMP 2010: 29-34
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    Kazuya Miyahara, Hajime Kitakami, Yoshifumi Takahashi, Keiichi Tamura, Susumu Kuroki:
    Mining Minimum Generalized Set Based on Multiple Alignments from Mismatch Cluster. BIOCOMP 2010: 35-41
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    Mohammad Abdel-Rahman, Aliaa A. A. Youssif, Fayed Ghaleb, Abdel-Badeeh M. Salem:
    A Fast Algorithm for Detecting Genes Controlled by RNAi by Degradation Technique. BIOCOMP 2010: 42-48
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    Hesam T. Dashti, Jernej Tonejc, Adel Ardalan, Alireza F. Siahpirani, Sabrina Guettes, Zohreh Sharif, Liya Wang, Amir H. Assadi:
    Applications of Machine Learning Methods to Quantifying Phenotypic Traits that Distinguish the Wild Type from the Mutant Arabidopsis Thaliana Seedlings during Root Gravitropism. BIOCOMP 2010: 49-54
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    Laurin A. J. Mueller, Karl G. Kugler, Andreas Dander, Christian Baumgartner, Armin Graber, Matthias Dehmer:
    A Network-based Approach to Classify Disease Stages of Prostate Cancer Using Quantitative Network Measures. BIOCOMP 2010: 55-61
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    Karl G. Kugler, Laurin A. J. Mueller, Ralf Gallasch, Armin Graber, Matthias Dehmer:
    A Novel Majority Vote Count Algorithm for Integrative Analysis of Association Networks. BIOCOMP 2010: 62-67
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    Vasim Mahamuda, Man Chon U, Khaled Rasheed:
    Application of Machine Learning Algorithms for Binning Metagenomic Data. BIOCOMP 2010: 68-74
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    Bernard Chen, Michael Miller, Timothy Montgomery, Terrance Griffin:
    Clustering using Positional Association Rules Algorithm on Protein Sequence Motifs. BIOCOMP 2010: 75-80
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    Songfeng Zheng, Weixiang Liu:
    Fitting Probit Regression using Functional Gradient Ascent for Cancer Classification. BIOCOMP 2010: 81-86
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    Ijaz Ali Shoukat, Mohsin Iftikhar:
    Suggested Hybrid Approach for Robust Classification of EEG Data for Brain Computer Interface. BIOCOMP 2010: 87-97
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    Umair Khan, Humaira Qureshi:
    Comparative Analysis of the Computational Methods used in Protein Structure Prediction. BIOCOMP 2010: 98-103
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    Manasi Raddi, Manasi Pandire, Radha Shankarmani, Kailas Devadkar:
    Improving Survival Rates Using Data Mining. BIOCOMP 2010: 104-112

Microarray, Gene Expression Analysis, and Gene Regulatory Networks

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    Yao Fu, Laura R. Jarboe, Julie A. Dickerson:
    Gene Regulatory Network Reconstruction Based on Gene Expression and Transcription Factor Activities. BIOCOMP 2010: 113-119
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    Liangjiang Wang:
    Computational Identification of Human Tissue-Specific Genes Using Public Microarray Expression Data. BIOCOMP 2010: 120-126
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    Rachel Caldwell, Jinda Kongcharoen, Yan-Xia Lin, Ren Zhang:
    The Length Distributions of Non-coding and Coding Sequences in Relation to Gene Expression: A Study on Arabidopsis thaliana. BIOCOMP 2010: 127-133
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    Venu K. Murthy, Edayathu V. Krishnamurthy:
    Can Graph Motifs Capture the Functions of a Complex Network? BIOCOMP 2010: 134-139
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    Manu Sheel Gupta, Pragya Goel:
    Normalized Microarrays for Analysis and Prediction (NMAP): An SOA Solution for Biomedical Research. BIOCOMP 2010: 140-145
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    Songfeng Zheng, Weixiang Liu:
    Median Boost for Cancer Classification with Gene Expression Data. BIOCOMP 2010: 146-151
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    Neha Puri, Niravath Geethu Issac, Shipra Vinodkumar Gupta, Kushagra Srivastava:
    Gene Expression Analysis of Genes Involved in Bypassing Cellular Senescence in Prostate Cancer. BIOCOMP 2010: 152-158

Protein Classification and Structure Prediction, Evolutionary, and Computational Molecular and Structural Biology

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    Sheryl Brahnam, Loris Nanni, Jian-Yu Shi, Alessandra Lumini:
    Local Phase Quantization Texture Descriptor for Protein Classification. BIOCOMP 2010: 159-165
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    Bo Li, Feng Luo, James Z. Wang, F. Alex Feltus, Jizhong Zhou:
    Effectively Integrating Information Content and Structural Relationship to Improve the GO-based Similarity Measure Between Proteins. BIOCOMP 2010: 166-172
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    Minseo Park:
    Detection of Alternative Splicing based on Reduced Amino Acid Alphabet. BIOCOMP 2010: 173-177
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    Wenhong Tian, Matthew C. Schmidt, Wenbin Chen, Nagiza F. Samatova:
    Multiple Alignment of Large Interaction Networks by Fast Identifying Maximal Conserved Patterns. BIOCOMP 2010: 178-184
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    Vincent Yip, Bernard Chen, Sinan Kockara:
    Extraction of Protein Sequence Motifs Information by Bi-Clustering Algorithm. BIOCOMP 2010: 185-190
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    Jack Horner:
    A Bayesian Phylogenetic Analysis of an Early Avian-Line Radiation. BIOCOMP 2010: 191-197
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    Bernard Chen, Christopher Rhodes, Christopher Kline, Luke Irvin:
    Protein Sequence Motif Information Generated by Fuzzy - Hybrid Hierarchical K-means Clustering Algorithm. BIOCOMP 2010: 198-201
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    Priyadarshini Lakshminarasimhan, Qi Liu, Robert E. Marmelstein, Mary Devito, Dongsheng Che:
    A Multi-Objective Evolutionary Approach for Haplotype Inference. BIOCOMP 2010: 202-208
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    Nazar Zaki, Wassim El-Hajj:
    Predicting Membrane Proteins Type Using Inter-domain Linker Knowledge. BIOCOMP 2010: 209-214
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    Yosi Shibberu, Mark Brandt, David Cooper:
    Intrinsic Contact Geometry of Protein Dynamics. BIOCOMP 2010: 215-219
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    Yan Jia, Ziyang Chen, Xuan Wang, Fa Zhang:
    Protein Sequence Alignment Algorithm Based on Hybrid Profile Information. BIOCOMP 2010: 220-224
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    Xiuping Tao, Andrew J. Bordner, Thomas C. Schulthess, Andrey A. Gorin:
    Kernelling Method for Identifying Near-Native Protein Decoy Structures. BIOCOMP 2010: 225-228
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    Bingru Yang:
    A Novel Protein Secondary Structure Prediction System Based on Compound Pyramid Model. BIOCOMP 2010: 229-237
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    Anjum Reyaz-Ahmed, Na'el Abu-Halaweh, Robert W. Harrison, Yan-Qing Zhang:
    Protein Model Assessment via Improved Fuzzy Decision Tree. BIOCOMP 2010: 238-241
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    Gregory Wood, Drew Clinkenbeard:
    Free Energy Decomposition of the Helix to Coil Transition. BIOCOMP 2010: 242-247
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    Jack Horner:
    Sensitivity of a Phylogeny of the Triassic Avian-LIne Radiation to Character-Transition Ordering. BIOCOMP 2010: 248-254

Comparative Sequence, Genome Analysis, Genome Assembly, and Genome Scale Computational Methods

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    Qiwei Li, Tong Liang, Shuo-Yen Robert Li, Xiaodan Fan:
    Bayesian Approach for Identifying Short Adjacent Repeats in Multiple Sequences. BIOCOMP 2010: 255-261
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    Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang:
    Non-Conservative Pairwise Statistical Significance of Local Sequence Alignment Using Position-Specific Substitution Matrices. BIOCOMP 2010: 262-268
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    Alvaro J. González, Li Liao, Cathy H. Wu:
    Predicting Functional Sites in Biological Sequences Using Canonical Correlation Analysis. BIOCOMP 2010: 269-273
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    Lars Wienbrandt, Manfred Schimmler:
    Collecting Statistical Information in DNA Sequences for the Detection of Special Motifs. BIOCOMP 2010: 274-278
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    Tai-Chun Wang, Javid Taheri, Albert Y. Zomaya:
    A Combinative Strategy for Higher Reliable Tag SNPs Selection. BIOCOMP 2010: 279-285
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    Vianney Morales Zamora, José Crispín Hernández Hernández, José Federico Ramírez-Cruz:
    Alignment of Sequences Using a Genetic Algorithm and Dynamic Programming. BIOCOMP 2010: 286-292
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    Eric Linton, Paul B. Albee, Patrick Kinnicutt, En-Bing Lin:
    Time Frequency Analysis of Mitochondrial Genome. BIOCOMP 2010: 293-297
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    Adetayo Kasim, Ziv Shkedy, Dan Lin, Suzy Van Sanden, José Cortiñas Abrahantes, Hinrich W. H. Göhlmann, Luc Bijnens, Dani Yekutieli, Michael Camilleri, Jeroen Aerssens, Willem Talloen:
    Translating Gene Signatures Across Tissues: A Statistical View. BIOCOMP 2010: 298-301
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    Pawel Blazej, Pawel Mackiewicz, Stanislaw Cebrat:
    Using the Genetic Code Wisdom for Recognizing Protein Coding Sequences. BIOCOMP 2010: 302-305
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    Yizhen Jia, Thomas K. F. Wong, You-Qiang Song, David K. Smith, Siu-Ming Yiu:
    Investigation of the Lineage and Tissue Specificity of Genes. BIOCOMP 2010: 306-310
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    Jaime Seguel, Yaisiel Torres:
    Identifying Highly Conserved Blocks in Families of Biosequences Through Selective Extensions. BIOCOMP 2010: 311-314
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    Syed Shams-ul-Haq:
    Asymptotic Analysis of SIMD Optimized DFT based EXON Prediction Algorithm for DNA Sequences. BIOCOMP 2010: 315-322

Drug Targets, Immunotherapy, and Computational Methods for System and Micro Biology

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    Meeta Pradhan, Mathew Palakal:
    Identifying CRC Specific Pathways and Drug Targets from Literature Augmented Proteomics Data. BIOCOMP 2010: 323-331
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    Giulio Tarro:
    Tumor Liberated Protein from Cancer and Perspectives for Immunotherapy. BIOCOMP 2010: 330-335
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    Ameer Shaik Abdul, Aparna Sriram, Sri Harsha Muppaneni, Teja Polapragada, Zhong-Hui Duan:
    Phylogenetic Analysis of H1N1 2009 Influenza Virus. BIOCOMP 2010: 334-338
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    Stephen Huff, Mark Rojas, Paul Havlak, Yuriy Fofanov:
    Co-Evolution of the Influenza Virus and Its Hosts. BIOCOMP 2010: 339-342
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    Jack Horner:
    An Estimate of the Mutation Rates of the Active Sites of Influenza A/H5N1 Neuraminidases. BIOCOMP 2010: 344-349
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    Jack Horner:
    A Bayesian Phylogenetic Analysis of Influenza A/H1N1 Neuraminidase-Encoding Segments. BIOCOMP 2010: 350-355
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    Tin-Chun Chu, Jonathan Jimenez, Lauren Strawn, Michelle Reed, Lauren Pohren, Lee H. Lee:
    Molecular Probes for the Detection of Cyanophage AS-1 and its Cyanobacterial Hosts. BIOCOMP 2010: 356-362
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    Aleksandra Markovets, Abigail Newsome, Charles Bland:
    Promoter Prediction in Halothiobacillus Neapolitanus c2 Based on Stress-induced Duplex Destabilization. BIOCOMP 2010: 363-366
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    Alice Karoubi Nordon:
    Biomedicine Issues In Modern Society: Focus On Assisted Reproduction Practice In Europe. BIOCOMP 2010: 367-374

Computational Methods for Filtering, Noise Cancellation, and Signal and Image Processing

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    Francesca Tria, Emanuele Caglioti, Vittorio Loreto, Simone Pompei:
    A Fast Noise Reduction Driven Distance-Based Phylogenetic Algorithm. BIOCOMP 2010: 375-380
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    Gilles Hermann, Hubert Kihl, Jean-Philippe Urban:
    Detection and Characterization of Vesicles in EM Images. BIOCOMP 2010: 381-386
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    Ömer M. Soysal, Jianhua Chen, Steven Bujenovic, Helmut Schneider:
    A Hierarchical Decision Engine for Computer Aided Lung Nodule Detection from CT Images. BIOCOMP 2010: 387-393
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    Wooram Park, Gregory S. Chirikjian:
    Re-alignment of Class Images in Single-particle Electron Microscopy. BIOCOMP 2010: 394-397
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    Mahua Bhattacharya, Arpita Das:
    Automated Medical Image Fusion: A Comparative Study Between GA and PSO Based Approaches. BIOCOMP 2010: 398-403
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    Julio Solano-González, Monica Vazquez, Ernesto Rubio, Israel Sanchez, Martin Fuentes, Fabián García Nocetti:
    Doppler Ultrasound Signal Spectral Response in the Measurement of Blood Flow Turbulence Caused by Stenosis. BIOCOMP 2010: 404-408
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    Bian Li, Mary C. Baker, Kwaku Akrofi, Allison McMahon:
    Use of a Sequential Forward Floating Search Method in Selecting fMRI and EEG Features for Classification of Visual Tasks. BIOCOMP 2010: 409-413
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    Fernando González, Lluís Belanche:
    Differentiation of Glioblastomas and Metastases using 1H-MRS spectral data. BIOCOMP 2010: 414-420

Modelling, Simulation and Optimization of Biological Systems

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    Paolo Locatelli, Nicola Restifo, Roberta Facchini, Elena Sini, Michele Torresani:
    Strategic Planning Of Identification Technologies In Healthcare Processes: A Model and A Real Case. BIOCOMP 2010: 421-427
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    Frank Nani, Mingxian Jin:
    Mathematical Modeling and Simulation of Latency Phase HIV-1 Dynamics. BIOCOMP 2010: 428-434
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    Shobha Gupta, T. K. Basak, S. K. Chaudhary:
    A Pathway Based Model of Retinoid Dependent Growth Arrest and Differentiation. BIOCOMP 2010: 435-441
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    Shashi Barak, Kusum Deep, Krishna Pratap Singh, Vinod Kumar Katiyar:
    Global Optimization of Molecular Potential Energy Function Using a Real Coded Genetic Algorithm. BIOCOMP 2010: 442-447
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    Silvana Ilie, Ekaterina Kudashkina:
    A Model Reduction Technique for Stochastic Biochemical Kinetics. BIOCOMP 2010: 448-453
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    Seyed Morteza Babamir, Mojdeh Rahmanian:
    Modeling and Analyzing CIIP Medical System Using Colored Petri-Nets. BIOCOMP 2010: 454-458
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    Cassiana Chassot Fulber, Dinler Amaral Antunes, Maurício Menegatti Rigo, José Artur Bogo Chies, Marialva Sinigaglia, Gustavo Fioravanti Vieira:
    Reconstruction of MHC Alleles by Cross Modeling and Structural Assessment. BIOCOMP 2010: 459-463
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    Jaime Rojas Sanchez, Jonathan Chaparro Sanchez, Jose Soriano:
    Design and Simulation of Optimal Control Systems Applied to COPD Patients. BIOCOMP 2010: 464-469
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    Zizhong Wang, Huiqing Yang:
    Computer Simulation for the Development of Immune Cells. BIOCOMP 2010: 470-475
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    Bernd Brückner, Tobias Walter:
    A New Attempt to Stimulus Related Data Analysis by Structured Neural Networks. BIOCOMP 2010: 476-480

Computational Methods, Computer-Assisted Medical Care and Service Systems, and Diagnostic Tools in Biomedical

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    Rory A. Lewis, Andrew M. White:
    Seizure Detection Using Sequential and Coincident Power Spectra with Deterministic Finite Automata. BIOCOMP 2010: 481-488
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    Luciano Comin Nunes, Plácido Rogério Pinheiro, Tarcisio Cavalcante Pequeno, Mirian Calíope Dantas Pinheiro:
    A Tool to Aid in the Diagnosis of Bipolar Disorder. BIOCOMP 2010: 489-494
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    Ana Karoline Araújo de Castro, Plácido Rogério Pinheiro, Mirian Calíope Dantas Pinheiro:
    A Tool to Aid in the Neuropsychological Diagnosis of Alzheimer's Disease. BIOCOMP 2010: 495-501
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    Loay Alzubaidi, Werner Mohl, Frank Rattay:
    Automatic Computation for Pressure Controlled Intermittent Coronary Sinus Occlusion. BIOCOMP 2010: 502-506
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    Aliaa A. A. Youssif:
    Computer-assisted Analysis of Fetal Hydrocephalus. BIOCOMP 2010: 507-513
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    Muneem Shahriar, Mary C. Baker:
    Using Kernel-PCA Features for EEG Spike Sorting. BIOCOMP 2010: 514-518
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    Mohamed Ezzeldin A. Bashir, Makki Akasha, Dong Gyu Lee, GyeongMin Yi, Keun Ho Ryu, Eun Jong Cha, Jang-Whan Bae, Myeong-Chan Cho, Chae Woo Yoo:
    Nested Ensemble Technique for Excellence Real Time Cardiac Health Monitoring. BIOCOMP 2010: 519-525
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    Isabelle Tamanini, Plácido Rogério Pinheiro, Mirian Calíope Dantas Pinheiro:
    Analysis of Verbal Decision Analysis Methods Considering a Multicriteria Model to the Diagnosis of Alzheimer's Disease. BIOCOMP 2010: 526-531
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    Christopher Theisen, Norbert W. Seidler:
    Computational Determination of Aqueous Concentrations of Inhalational Anesthetics. BIOCOMP 2010: 532-536
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    Alessandro Brawerman, Mauricio Perretto, Edson Sieczka, Fabio Hoffmann:
    Towards A Real-Time Mobile Health Care Monitoring Embedded System. BIOCOMP 2010: 537-543
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    Miguel Vargas-Lombardo, Armando Jipsion, Rafael Vejarano, Ismael Camargo, Humberto Alvarez, Elena Villalba Mora, Ernestina Menasalva Ruiz:
    A Holistic, Interactive and Persuasive Model to Facilitate Self-care of Patients with Diabetes in Latin America and the Caribbean. BIOCOMP 2010: 544-548
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    Melissa Stockman, Mariette Awad:
    Multistage SVM as a Clinical Decision Making Tool for Predicting Post Operative Patient Status. BIOCOMP 2010: 549-552
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    V. K. Sudha, N. Ashok Kumar, R. Sudhakar:
    Electrical Activity of Human Brain - An Early Marker for Alzheimer's Disease. BIOCOMP 2010: 553-556
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    Guohong Zhou, Shuqian Luo:
    A Tumor Diagnoses Assistant System in Traditional Chinese Medicine(TCM) Combining With Modern Medicine. BIOCOMP 2010: 557-560
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    Dinesh Kumar Saini, Sanad Al-Maskari, Wail M. Omar:
    Web 2.0 and Healthcare Collaborative Framework for Health Awareness and Education. BIOCOMP 2010: 561-564
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    Weimin Yu, Bo Ning, Yunfeng Zhang, Jianye Zhao:
    A Real-time QRS Detection System Based on Neural Network. BIOCOMP 2010: 565-570

Software Packages and Other Computational Topics Including in Bioinformatics

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    Daniel Honbo, Ankit Agrawal, Alok N. Choudhary:
    Efficient Pairwise Statistical Significance Estimation using FPGAs. BIOCOMP 2010: 571-577
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    Joe Feldkamp:
    Electrical Properties Of Hydrogels From Non-Equilibrium Molecular Dynamics. BIOCOMP 2010: 578-583
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    Bhadrachalam Chitturi:
    On Complexity of Transforming Strings. BIOCOMP 2010: 584-590
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    Bhadrachalam Chitturi, Ivan Hal Sudborough:
    Prefix Reversals on Strings. BIOCOMP 2010: 591-598
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    Suhair Amer, John Hamilton:
    A Danger Theory Model. BIOCOMP 2010: 599-604
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    Hiroshi Hatsuda:
    Automatic Cell Identification Using a Multiple Marked Point Process. BIOCOMP 2010: 605-609
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    Jack Horner:
    BFAT: Bovine Spongiform Encephalopathy (BSE) Forensic Analysis Tool. BIOCOMP 2010: 610-616
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    Dinesh Kumar Saini, Osama A. Rahmeh, Hemraj Saini:
    Extended Secure Architecture of HIS: HL7. BIOCOMP 2010: 617-623
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    Marie Vendettuoli, Dianne Cook, Heike Hofmann:
    qtpaintgui() - An integration of Command Line and Graphical User Interface. BIOCOMP 2010: 624-629
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    Robert Warner:
    The Statistically Meaningful Display of Analog Data. BIOCOMP 2010: 630-633
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    Pamita Awasthi, Priyanka Sharma:
    Computer Aided Designing of Juvenile Hormone Analogues as a Potential Pesticide Based on Ligand - Receptor Interaction - A Docking Study. BIOCOMP 2010: 634-639
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    Jack Horner:
    A Scale-Free-Network Analog of the Canonical Potential-Energy Distribution. BIOCOMP 2010: 640-643
• 
  • 
  • 
  • 
  • 
    Xinhua Ji:
    Global Stability for the n-Species Lotka-Volterra Tree Systems. BIOCOMP 2010: 644-650
• 
  • 
  • 
  • 
  • 
    Shashank Shekhar, Priyanka Dhingra, Bharat Lakhani, Avinash Mishra, Bhyravabhotla Jayaram:
    Bhageerath: A Web Enabled High Performance Computing (HPC) Software Suite for Predicting The Tertiary Structures of Small Globular Proteins Using all Atom Energy Based Ab initio Methods. BIOCOMP 2010: 651-657
• 
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  • 
    Zhi-fu Tao, Xia-chen Dong, Meng Yao, Yi-zhou Yao:
    Biopsy Back Wave Preprocessing Research of BRATUMASS System based on Applications of Fractional Fourier Transform. BIOCOMP 2010: 658-661
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  • 
  • 
  • 
    Keith E. Schubert, Ernesto Gomez, Jane Curnutt, Penelope Boston:
    To Live and Die in CA. BIOCOMP 2010: 662-665
• 
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  • 
  • 
  • 
    Iraj Derakhshan:
    From Celestial to Terrestrial: A New Light on David Kinnebrook's Systematic Error of Judgment at Greenwich in 1796. BIOCOMP 2010: 666-670

Algebraic Biology and Bioinformatics, ABB

• 
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    Jason Gershman:
    Incorporating Gene Ontology in Clustering Time-Course Gene-Expression Array Data. BIOCOMP 2010: 671-677
• 
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  • 
    Matthew He, Sergei V. Petoukhov:
    Matrix Genetics and THE Bipolar Algbera of the Genetic Code. BIOCOMP 2010: 678-686

Novel Algorithms for In-Silico Modeling Biological Networks and Generating Quantitative Predictions

• 
  • 
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  • 
  • 
    Peter Langfelder, Tova Fuller, Steve Horvath:
    Comparing Robust Methods for Defining Directed Networks and Their Hub Nodes. BIOCOMP 2010: 687-692
• 
  • 
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  • 
  • 
    Jiangeng Li, Yi Zhu, Xiaogang Ruan:
    Identification of Gene Pathway Involved in Clinical Traits Using Bayesian Network Classifiers. BIOCOMP 2010: 693-699
• 
  • 
  • 
  • 
  • 
    Patrick Meyer, Daniel Marbach, Sushmita Roy, Manolis Kellis:
    Information-Theoretic Inference of Gene Networks Using Backward Elimination. BIOCOMP 2010: 700-705
• 
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  • 
  • 
    Fei-Hung Hung, Hung-Wen Chiu:
    Pathway-based Microarray Data Analysis for Cancer Research. BIOCOMP 2010: 706-711
• 
  • 
  • 
  • 
  • 
    Jun Zhu, Manikandan Narayanan, Bin Zhang, Kai Wang:
    Latent Variables in Bayesian Network Construction and Inference. BIOCOMP 2010: 712-716
• 
  • 
  • 
  • 
  • 
    Hye Young Kim, Jin Hyuk Kim:
    A Study of Genomic Modules and Intermodular Networks for Understanding the Operating System of Life. BIOCOMP 2010: 717-723
• 
  • 
  • 
  • 
  • 
    Rui Chang, Wei Wang:
    A Novel Knowledge-driven Systems Biology Approach for Phenotype Prediction Upon Genetic Intervention. BIOCOMP 2010: 724-733
• 
  • 
  • 
  • 
  • 
    Sandro Lambeck, Andreas Dräger, Reinhard Guthke:
    Network Inference by Considering Multiple Objectives: Insights from In Vivo Transcriptomic Data Generated by a Synthetic Network. BIOCOMP 2010: 734-742

Biological Networks, Feature Extraction, Gene Expressions, HIV, Software Tools, Modeling, Motifs, Proteomics, DNA, Data Analysis, Medicine, BCI/EEG, RNA, and Pattern Recognition

• 
  • 
  • 
  • 
  • 
    Baikang Pei, Dong-Guk Shin:
    Reconstruction of Biological Networks Structure by Using Bayesian Network Models with a Two-step Learning Procedure. BIOCOMP 2010: 743-749
• 
  • 
  • 
  • 
  • 
    Martin Ehler, Brian P. Brooks, Robert F. Bonner:
    Directional Equilibrium of Gene Regulatory Networks in Developmental Biology. BIOCOMP 2010: 750-754
• 
  • 
  • 
  • 
  • 
    Anke Meyer-Bäse, Fabian J. Theis:
    Robust Stability Analysis and Design Under Consideration of Multiple Feedback Loops in the Tryptophan Regulatory Network of E. coli. BIOCOMP 2010: 755-759
• 
  • 
  • 
  • 
  • 
    Gregor Stiglic, Igor Pernek, Peter Kokol:
    Identification of Specific Gene Expression Signatures in Oncology. BIOCOMP 2010: 760-765
• 
  • 
  • 
  • 
  • 
    Freddy Cliquet, Guillaume Fertin, Irena Rusu, Dominique Tessier:
    Proper Alignment of MS/MS Spectra from Unsequenced Species. BIOCOMP 2010: 766-772
• 
  • 
  • 
  • 
  • 
    Gugulethu Mabuza, Tarik Al-Ani, Karim Djouani, Johnson I. Agbinya:
    Non Destructive Sensing of Food Materials using Fuzzy c-means Clustering. BIOCOMP 2010: 773-778
• 
  • 
  • 
  • 
  • 
    Ding-Geng Chen, Karl E. Peace, Lili Yu, Yuhlong Lio, Yibin Wang:
    Interval-Censoring in Biomedical and Biopharmaceutical Clinical Trials. BIOCOMP 2010: 779-784
• 
  • 
  • 
  • 
  • 
    Chiou-Yi Hor, Chang-Biau Yang, Chiou-Ting Tseng, Hung-Hsin Chen:
    A Tool Preference Selection Method for RNA Secondary Structure Prediction with SVM. BIOCOMP 2010: 785-791
• 
  • 
  • 
  • 
  • 
    Nicolas Cebron:
    Cell Assay Image Classification with Few Labeled Examples. BIOCOMP 2010: 792-795
• 
  • 
  • 
  • 
  • 
    Shih-Yen Ku, Yuh-Jyh Hu:
    SA-Motifbase: A Database of Protein Structural Alphabet Motifs. BIOCOMP 2010: 796-800
• 
  • 
  • 
  • 
  • 
    Juan Carlos Cuevas-Tello, Christian Alberto Garcia-Sepulveda, Héctor G. Pérez-González, Manuel Mora:
    IT Services for Decision Support Systems on Public Health Problems by using Genomic Data. BIOCOMP 2010: 801-806
• 
  • 
  • 
  • 
  • 
    Ashish Gupta, Anshika Malaviya, Sharada M. Potukuchi, Jitendra Narayan:
    Three Dimensional Structure Modeling and Analysis of Ribulose 1, 5-Bisphosphate Carboxylase of Hypericum Perforatum. BIOCOMP 2010: 807-810
• 
  • 
  • 
  • 
  • 
    Mike Eagar, Mark J. Clement, Quinn Snell:
    Spatially Indexing Sequences using Hashes. BIOCOMP 2010: 811-814
• 
  • 
  • 
  • 
  • 
    Lakshmi Bhavani Nelavelli:
    Analysis of Hydrogenase Maturation Protease from Pyrococcus abyssi Through Homology Modeling. BIOCOMP 2010: 815-821
• 
  • 
  • 
  • 
  • 
    Giuseppe Tritto, Xianghong Ma, Mark Price:
    MicroLabs for Human Sperm. BIOCOMP 2010: 822-826
• 
  • 
  • 
  • 
  • 
    Salahuddin Mohammad Masum, Mohammed Yeasin:
    Parallel Hybrid Genetic Algorithm based Dynamic Load-Balancing for Mining of Molecular Fragments. BIOCOMP 2010: 827-833
• 
  • 
  • 
  • 
  • 
    Foued Derraz, Antonio Pinti, Abdelmalik Taleb-Ahmed, Laurent Peyrodie, Gérard Forzy, Azeddine Chikh:
    Graph Cut Based Active Contours and Statistical Shape Priors. BIOCOMP 2010: 834-840
• 
  • 
  • 
  • 
  • 
    Nitin, Pradeep Kumar Naik, Anitya Nijhara, Shantanu Agarwal, Ayush Agarwal, Shweta Malik, Ujjawal Khandelwal:
    A Case Tool for Prediction of Squamousal Cancerous and Non-Cancerous Cells using DIP and ANN. BIOCOMP 2010: 841-846
• 
  • 
  • 
  • 
  • 
    Douglas Cork, Steven Lembark, Sodsai Tovanabutra, Eric Sanders-Buell, Bruce Brown, Merlyn Robb, Lindsay Wieczorek, Victoria Polonis, Nelson Michael, Jerome H. Kim:
    Application of W-curves and TSP to Clustering HIV-1 Sequences by Epitope. BIOCOMP 2010: 847-853
• 
  • 
  • 
  • 
  • 
    Anke Meyer-Bäse, Claudia Plant, Susanne Cappendijk, Fabian J. Theis:
    Robust Stability Analysis of Multi-Time Scale Genetic Regulatory Networks under Parametric Uncertainties. BIOCOMP 2010: 854-863
• 
  • 
  • 
  • 
  • 
    Avid Roman Gonzalez:
    Communication Technologies Based on Brain Activity. BIOCOMP 2010: 864-869
• 
  • 
  • 
  • 
  • 
    Lukas Olson, Mark J. Clement, Quinn Snell:
    The Impact of Equally-Optimal Pairwise Alignments. BIOCOMP 2010: 870-872
• 
  • 
  • 
  • 
  • 
    Mauricio Plaza Torres:
    Infrared Tracking for Locomotion and Devices Control in Quadriplegic People. BIOCOMP 2010: 873-876
• 
  • 
  • 
  • 
  • 
    Marcella Coccanari:
    Engineering Information Technology for Health in Emergency Management. BIOCOMP 2010: 877-881
• 
  • 
  • 
  • 
  • 
    Margaret Goodman:
    The Beta Adrenergic Receptor: A Case Study in Modeling a G Protein Coupled Receptor in a Cell Biology Class. BIOCOMP 2010: 882-

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