Paleogenomic Inferences of Dog Domestication (original) (raw)
References
Alkorta-Aranburu G, Beall CM, Witonsky DB, Gebremedhin A, Pritchard JK, Di Rienzo A. The genetic architecture of adaptations to high altitude in Ethiopia. PLoS Genet. 2012;8(12):e1003110. ArticleCASPubMedPubMed Central Google Scholar
AnzideI AP, Bulgarelli GM, Catalano P, Cerilli E, Gallotti R, Lemorini C, Milli S, Palombo MR, Pantano W, Santucci E. Ongoing research at the late middle Pleistocene site of La Polledrara di Cecanibbio (central Italy), with emphasis on human-elephant relationships. Quat Int. 2012;255:171–87. Article Google Scholar
Ardalan A, Oskarsson MC, Van Asch B, Rabakonandriania E, Savolainen P. African origin for Madagascan dogs revealed by mtDNA analysis. R Soc Open Sci. 2015;2(5):140552. ArticlePubMedPubMed CentralCAS Google Scholar
Axelsson E, Ratnakumar A, Arendt M-L, Maqbool K, Webster MT, Perloski M, Liberg O, Arnemo JM, Hedhammar ÃK, Lindblad-Toh K. The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature. 2013;495:360–4. ArticleCASPubMed Google Scholar
Baryshnikov GF, Mol D, Tikhonov AN. Finding of the late Pleistocene carnivores in Taimyr Peninsula (Russia, Siberia) with paleoecological context. Russ J Theriol. 2009;8(2):107–13. Article Google Scholar
Bell T. A history of British quadrupeds, including the Cetacea. London: John van Voorst; 1837. Book Google Scholar
Benecke N. Studies on early dog remains from northern Europe. J Archaeol Sci. 1987;14(1):31–49. Article Google Scholar
Binder WJ, Van Valkenburgh B. A comparison of tooth wear and breakage in Rancho La Brea sabertooth cats and dire wolves across time. J Vertebr Paleontol. 2010;30(1):255–61. Article Google Scholar
Binder WJ, Thompson EN, Van Valkenburgh B. Temporal variation in tooth fracture among Rancho La Brea dire wolves. J Vertebr Paleontol. 2002;22(2):423–8. Article Google Scholar
Bjoernerfeldt S, Webster MT, Vilà C. Relaxation of selective constraint on dog mitochondrial DNA following domestication. Genome Res. 2006;16(8):990–4. ArticleCAS Google Scholar
Boeskorov G, Baryshnikov G. Late quaternary Carnivora of Yakutia. Saint-Petersburg: Nauka; 2013. Google Scholar
Bonifay M-F. Carnivores quaternaires du Sud-Est de la France. 1971. Google Scholar
Botigué LR, Song S, Scheu A, Gopalan S, Pendleton AL, Oetjens M, Taravella AM, Seregély T, Zeeb-Lanz A, Arbogast R-M. Ancient European dog genomes reveal continuity since the early Neolithic. Nat Commun. 2017;8:16082. ArticlePubMedPubMed CentralCAS Google Scholar
Boudadi-Maligne M, Mallye J-B, Langlais M, Barshay-Szmidt C. Magdalenian dog remains from Le Morin rock-shelter (Gironde, France). Socio-economic implications of a zootechnical innovation. PALEO Revue d’archéologie préhistorique. 2012;(23):39–54. Google Scholar
Boyko AR, Boyko RH, Boyko CM, Parker HG, Castelhano M, Corey L, Degenhardt JD, Auton A, Hedimbi M, Kityo R. Complex population structure in African village dogs and its implications for inferring dog domestication history. Proc Natl Acad Sci. 2009;106(33):13903–8. ArticleCASPubMedPubMed Central Google Scholar
Brown SK, Pedersen NC, Jafarishorijeh S, Bannasch DL, Ahrens KD, Wu J-T, Okon M, Sacks BN. Phylogenetic distinctiveness of Middle Eastern and Southeast Asian village dog Y chromosomes illuminates dog origins. PLoS One. 2011;6(12):e28496. ArticleCASPubMedPubMed Central Google Scholar
Brugal J-P, Boudadi-Maligne M. Quaternary small to large canids in Europe: taxonomic status and biochronological contribution. Quat Int. 2011;243(1):171–82. Article Google Scholar
Camarós E, Münzel SC, Mn C, Rivals F, Conard NJ. The evolution of Paleolithic hominin-carnivore interaction written in teeth: stories from the Swabian Jura (Germany). J Archaeol Sci Rep. 2016;6:798–809. Google Scholar
Clutton-Brock J. Domesticated animals from early times. In: Domesticated animals from early times. London: British Museum (Natural History) and William Heinemann Ltd; 1981. Google Scholar
Clutton-Brock J. The process of domestication. Mammal Rev. 1992;22:79–85. Article Google Scholar
Clutton-Brock J. Origins of the dog: domestication and early history. In: Serpell J, editor. The domestic dog, its evolution, behaviour and interactions with people. Cambridge: Cambridge University Press; 1995. p. 7–20. Google Scholar
Coppinger R, Coppinger L. Dogs: a startling new understanding of canine origin, behavior & evolution. New York: Simon and Schuster; 2001. Google Scholar
Coppinger R, Coppinger L. Dogs: a new understanding of canine origin, behavior and evolution. Chicago: University of Chicago Press; 2002. Google Scholar
Coppinger R, Schneider R. Evolution of working dogs. In: The domestic dog: its evolution, behaviour and interactions with people. 1995:21–47 Google Scholar
Crockford SJ, Kuzmin YV. Comments on Germonpré et al., Journal of Archaeological Science 36, 2009 “Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes”, and Germonpré, Lázničková-Galetová, and Sablin, Journal of Archaeological Science 39, 2012 “Palaeolithic dog skulls at the Gravettian Předmostí site, the Czech Republic”. J Archaeol Sci. 2012;39(8):2797–801. Article Google Scholar
Cuvier G. Le Regne Animal Distribue d’apres son Organisation, pour servir de base a l’histoire naturelle des Animaux et d’introduction a l’Anatomie Comparée. Paris; 1817. Google Scholar
Darwin C. On the origin of species by means of natural selection. London: Murray; 1859. Google Scholar
Darwin C. The variation of animals and plants under domestication, vol. 2. New York: Orange Judd; 1868. Google Scholar
Davis SJ, Valla FR. Evidence for domestication of the dog 12,000 years ago in the Natufian of Israel. Nature. 1978;276(5688):608. Article Google Scholar
Dikov NN. The Ushki sites, Kamchatka Peninsula. In: West FH, editor. American beginnings, the prehistory and palaeoecology of Beringia. Chicago: University of Chicago Press; 1996. p. 244–50. Google Scholar
Ding Z, Oskarsson M, Ardalan A, Angleby H, L-Gr D, Tepeli C, Kirkness E, Savolainen P, Zhang Y. Origins of domestic dog in southern East Asia is supported by analysis of Y-chromosome DNA. Heredity. 2012;108(5):507–14. ArticleCASPubMed Google Scholar
Downs JF. Domestication: an examination of the changing social relationships between man and animals. Kroeber Anthr Soc Paps. 1960;22:18–67. Google Scholar
Drake AG, Coquerelle M, Colombeau G. 3D morphometric analysis of fossil canid skulls contradicts the suggested domestication of dogs during the late Paleolithic. Sci Rep. 2015;5:8299. ArticleCASPubMedPubMed Central Google Scholar
Druzhkova AS, Thalmann O, Trifonov VA, Leonard JA, Vorobieva NV, Ovodov ND, Graphodatsky AS, Wayne RK. Ancient DNA analysis affirms the Canid from Altai as a primitive dog. PLoS One. 2013;8(3):e57754. ArticleCASPubMedPubMed Central Google Scholar
Dyson RH. Archeology and the domestication of animals in the old world. Am Anthropol. 1953;55(5):661–73. Article Google Scholar
Ellegren H. Microsatellites: simple sequences with complex evolution. Nat Rev Genet. 2004;5(6):435–45. ArticleCASPubMed Google Scholar
Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Del-Vecchyo DO. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Res. 2016;26(2):163–73. ArticleCASPubMedPubMed Central Google Scholar
Flower LO, Schreve DC. An investigation of palaeodietary variability in European Pleistocene canids. Quat Sci Rev. 2014;96:188–203. Article Google Scholar
Frantz LAF, Mullin VE, Pionnier-Capitan M, Ol L, Ollivier M, Perri A, Linderholm A, Mattiangeli V, Teasdale MD, Dimopoulos EA. Genomic and archaeological evidence suggest a dual origin of domestic dogs. Science. 2016;352(6290):1228–31. ArticleCASPubMed Google Scholar
Freedman AH, Wayne RK. Deciphering the origin of dogs: from fossils to genomes. Annu Rev Anim Biosci. 2016. Google Scholar
Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B. Genome sequencing highlights the dynamic early history of dogs. PLoS Genet. 2014;10(1):e1004016. ArticlePubMedPubMed CentralCAS Google Scholar
Freedman AH, Lohmueller KE, Wayne RK. Evolutionary history, selective sweeps, and deleterious variation in the dog. Annu Rev Ecol Evol Syst. 2016;47:73–96. Article Google Scholar
Galton F. The first steps towards the domestication of animals. Trans Ethnol Soc Lond. 1865;3:122–38. Article Google Scholar
Galton F. Inquiries into the human faculty & its development. London: JM Dent and Company; 1883. Book Google Scholar
Garcia M-A. Ichnologie générale de la grotte Chauvet. Bulletin de la Société Préhistorique Française. 2005:103–8. Article Google Scholar
Garcia-Moreno J, Matocq MD, Roy MS, Geffen E, Wayne RK. Relationships and genetic purity of the endangered Mexican wolf based on analysis of microsatellite loci. Conserv Biol. 1996;10(2):376–89. Article Google Scholar
Geffen E, Anderson MJ, Wayne RK. Climate and habitat barriers to dispersal in the highly mobile grey wolf. Mol Ecol. 2004;13(8):2481–90. ArticleCASPubMed Google Scholar
Germonpré M, Sablin MV, Stevens RE, Hedges RE, Hofreiter M, Stiller M, Després VR. Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes. J Archaeol Sci. 2009;36(2):473–90. Article Google Scholar
Germonpré M, Lázničková-Galetová M, Sablin MV. Palaeolithic dog skulls at the Gravettian Předmostí site, the Czech Republic. J Archaeol Sci. 2012;39(1):184–202. Article Google Scholar
Germonpré M, Lázničková-Galetová M, Losey RJ, Räikkönen J, Sablin MV. Large canids at the Gravettian Předmostí site, the Czech Republic: the mandible. Quat Int. 2015a;359:261–79. Article Google Scholar
Germonpré M, Sablin MV, Lázničková-Galetová M, Després V, Stevens RE, Stiller M, Hofreiter M. Palaeolithic dogs and Pleistocene wolves revisited: a reply to Morey (2014). J Archaeol Sci. 2015b;54:210–6. Article Google Scholar
Germonpré M, Fedorov S, Danilov P, Galeta P, Jimenez E-L, Sablin M, Losey RJ. Palaeolithic and prehistoric dogs and Pleistocene wolves from Yakutia: identification of isolated skulls. J Archaeol Sci. 2017;78:1–19. Article Google Scholar
Gou X, Wang Z, Li N, Qiu F, Xu Z, Yan D, Yang S, Jia J, Kong X, Wei Z. Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia. Genome Res. 2014;24(8):1308–15. ArticleCASPubMedPubMed Central Google Scholar
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH-Y, Hansen NF, Durand EY, Malaspinas A-S, Jensen JD, Marques-Bonet T, Alkan C, Prufer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Hober B, Hoffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Z, Gusic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Paabo S. A draft sequence of the Neandertal genome. Science. 2010;328(5979):710–22. ArticleCASPubMedPubMed Central Google Scholar
Haak W, Lazaridis I, Patterson N, Rohland N, Mallick S, Llamas B, Brandt G, Nordenfelt S, Harney E, Stewardson K, Fu Q, Mittnik A, Banffy E, Economou C, Francken M, Friederich S, Pena RG, Hallgren F, Khartanovich V, Khokhlov A, Kunst M, Kuznetsov P, Meller H, Mochalov O, Moiseyev V, Nicklisch N, Pichler SL, Risch R, Rojo Guerra MA, Roth C, Szecsenyi-Nagy A, Wahl J, Meyer M, Krause J, Brown D, Anthony D, Cooper A, Alt KW, Reich D. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature. 2015;522(7555):207–11. ArticleCASPubMedPubMed Central Google Scholar
Housley RA, Gamble CS, Street M, Pettitt P. Radiocarbon evidence for the Lateglacial human recolonisation of northern Europe. Proc Prehist Soc. 1997;63:25–54. Article Google Scholar
Hunter J, Mears W. Observations tending to Shew that the wolf, jackal, and dog, are all of the same species. Philos Trans R Soc Lond B Biol Sci. 1787;77:253–66. Google Scholar
Hurles ME, Sykes BC, Jobling MA, Forster P. The dual origin of the Malagasy in Island Southeast Asia and East Africa: evidence from maternal and paternal lineages. Am J Hum Genet. 2005;76(5):894–901. ArticleCASPubMedPubMed Central Google Scholar
Kahlke R-D. Taubach, Gebiet der ehemaligen Travertinbrueche. Altenburger Naturwissenschaftliche Forschungen. 1994;7:366–7. Google Scholar
Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM, Venter JC. The dog genome: survey sequencing and comparative analysis. Science. 2003;301(5641):1898–903. ArticlePubMed Google Scholar
Koler-Matznick J. The origin of the dog revisited. Anthrozoös. 2002;15(2):98–118. Article Google Scholar
Kuzmina I, Sablin M. Pozdnepleistotsenovyi pesets verhnei Desny. Materiali po mezozoickoi i kainozoickoi istorii nazemnykh pozvonochnykh Trudy Zoologicheskogo Instituta RAN, vol 249; 1993. p. 93–104. Google Scholar
Larson G, Burger J. A population genetics view of animal domestication. Trends Genet. 2013;29(4):197–205. ArticleCASPubMed Google Scholar
Larson G, Karlsson EK, Perri A, Webster MT, Ho SYW, Peters J, Stahl PW, Piper PJ, Lingaas F, Fredholm M, Comstock KE, Modiano JF, Schelling C, Agoulnik AI, Leegwater PA, Dobney K, Vigne J-D, Vilà C, Andersson L, Lindblad-Toh K. Rethinking dog domestication by integrating genetics, archeology, and biogeography. Proc Natl Acad Sci U S A. 2012;109(23):8878–83. ArticleCASPubMedPubMed Central Google Scholar
Lawrence B, Reed CA. The dogs from Jarmo. In: Braidwood LS, Braidwood RJ, Howe B, Reed CA, Watson PJ, editors. Prehistoric archaeology along the Zagros Flanks. Chicago: Oriental Institute, University of Chicago; 1983. p. 485–9. Google Scholar
Ledoux L, Boudadi-Maligne M. The contribution of geometric morphometric analysis to prehistoric ichnology: the example of large canid tracks and their implication for the debate concerning wolf domestication. J Archaeol Sci. 2015;61:25–35. Article Google Scholar
Leonard JA, Wayne RK, Wheeler J, Valadez R, Guillen S, Vilà C. Ancient DNA evidence for old world origin of new world dogs. Science. 2002;298(5598):1613–6. ArticleCASPubMed Google Scholar
Leonard JA, Vilà C, Fox-Dobbs K, Koch PL, Wayne RK, Van Valkenburgh B. Megafaunal extinctions and the disappearance of a specialized wolf Ecomorph. Curr Biol. 2007;17(13):1146–50. ArticleCASPubMed Google Scholar
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, Ponting CP, Galibert F, Smith DR, deJong PJ, Kirkness E, Alvarez P, Biagi T, Brockman W, Butler J, Chin C-W, Cook A, Cuff J, Daly MJ, DeCaprio D, Gnerre S, Grabherr M, Kellis M, Kleber M, Bardeleben C, Goodstadt L, Heger A, Hitte C, Kim L, Koepfli K-P, Parker HG, Pollinger JP, Searle SMJ, Sutter NB, Thomas R, Webber C, Lander ES. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 2005;438(7069):803. ArticleCASPubMed Google Scholar
Linnaeus C. Systema Naturae, Editio decima. Holmiae: Laur. Salvius; 1758. Google Scholar
Lorenz K. Man meets dog. London: Methuen; 1954. Google Scholar
Lorenz K. Foreword. In: Fox MW, editor. The wild canids: their systematics, behavioral ecology and evolution. New York: Van Nostrand Reinhold; 1975. Google Scholar
Losey RJ, Garvie-Lok S, Leonard JA, Katzenberg MA, Germonpré M, Nomokonova T, Sablin MV, Goriunova OI, Berdnikova NE, Savel’ev NA. Burying dogs in ancient Cis-Baikal, Siberia: temporal trends and relationships with human diet and subsistence practices. PLoS One. 2013;8(5):e63740. ArticleCASPubMedPubMed Central Google Scholar
Malmström H, Vilà C, Gilbert M, Storå J, Willerslev E, Holmlund G, Götherström A. Barking up the wrong tree: modern northern European dogs fail to explain their origin. BMC Evol Biol. 2008;8(1):71. ArticlePubMedPubMed CentralCAS Google Scholar
Meachen JA, Brannick AL, Fry TJ. Extinct Beringian wolf morphotype found in the continental US has implications for wolf migration and evolution. Ecol Evol. 2016;6(10):3430–8. ArticlePubMedPubMed Central Google Scholar
Morey DF. The early evolution of the domestic dog. Am Sci. 1994;82(4):336–47. Google Scholar
Morey DF. In search of Paleolithic dogs: a quest with mixed results. J Archaeol Sci. 2014;52:300–7. ArticleCAS Google Scholar
Morey DF, Jeger R. Paleolithic dogs: why sustained domestication then? J Archaeol Sci Rep. 2015;3:420–8. Google Scholar
Müller W. Les vestiges osseux. In: Leesch D, Cattin M-I, Müller W (eds) Hauterive-Champréveyres et Neuchâtel-Monruz: Témoins d‘implantations magdaléniennes et aziliennes sur la rive nord du lac de Neuchâtel, vol 31. Archéologie neuchâteloise; 2004. p. 96–109. Google Scholar
Müller W. Les témoins animaux. In: Bullinger J, Leesch D, Plumettaz N (eds) Le site magdalénien de Monruz: Premiers éléments pour l‘analyse d‘un habitat de plein air. Service et musée cantonal d‘archéologie de Neuchâtel; 2006. p. 123–37. Google Scholar
Müller W. Le site magdalénien de Monruz 3. Aquisition, traitement et consommation des ressources animales, vol 49. Archéologie neuchâteloise. Neuchâtel: Musée et Service cantonal d’archéologie; 2013. Google Scholar
Musiani M, Leonard JA, Cluff HD, Gat CC, Mariani S, Paquet PC, Vilà C, Wayne RK. Differentiation of tundra/taiga and boreal coniferous forest wolves: genetics, coat colour and association with migratory caribou. Mol Ecol. 2007;16(19):4149–70. ArticleCASPubMed Google Scholar
Musil R. Evidence for the domestication of wolves in Central European Magdalenian sites in dogs through time: an archaeological perspective. In: Crockford SJ (ed) Proceedings of the 1st ICAZ symposium on the history of the domestic dog. British Archaeological Reports International Series; 2000. Google Scholar
Napierala H, Uerpmann H-P. A ‘new’ palaeolithic dog from central Europe. Int J Osteoarchaeol. 2012;22(2):127–37. Article Google Scholar
Nichols R. Gene trees and species trees are not the same. Trends Ecol Evol. 2001;16(7):358–64. ArticleCASPubMed Google Scholar
Nielsen R, Akey JM, Jakobsson M, Pritchard JK, Tishkoff S, Willerslev E. Tracing the peopling of the world through genomics. Nature. 2017;541(7637):302–10. ArticleCASPubMedPubMed Central Google Scholar
Nobis G. Der älteste Haushund lebte vor 14000 Jahren. Umschau. 1979;79:610. Google Scholar
Ovodov ND, Crockford SJ, Kuzmin YV, Higham TF, Hodgins GW, van der Plicht J. A 33,000-year-old incipient dog from the Altai Mountains of Siberia: evidence of the earliest domestication disrupted by the last glacial maximum. PLoS One. 2011;6(7):e22821. ArticleCASPubMedPubMed Central Google Scholar
Pang J-F, Kluetsch C, Zou X-J, A-b Z, Luo L-Y, Angleby H, Ardalan A, Ekström C, Sköllermo A, Lundeberg J, Matsumura S, Leitner T, Zhang Y-P, Savolainen P. mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves. Mol Biol Evol. 2009;26(12):2849–64. ArticleCASPubMedPubMed Central Google Scholar
Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD, Malek TB, Johnson GS, DeFrance HB, Ostrander EA, Kruglyak L. Genetic structure of the purebred domestic dog. Science. 2004;304(5674):1160–4. ArticleCASPubMed Google Scholar
Perri A. A wolf in dog’s clothing: initial dog domestication and Pleistocene wolf variation. J Archaeol Sci. 2016;68:1–4. Article Google Scholar
Pidoplichko IH. Upper Palaeolithic Dwellings of Mammoth Bones in the Ukraine: Kiev-Kirillovskii, Gontsy, Dobranichevka, Mezin, and Mezhirich, vol. 712. Oxford: British Archaeological Reports International Series; 1998. Book Google Scholar
Pionnier-Capitan M, Bemilli C, Bodu P, Célérier G, Ferrié J-G, Fosse P, Garcià M, Vigne J-D. New evidence for Upper Palaeolithic small domestic dogs in South-Western Europe. J Archaeol Sci. 2011;38(9):2123–40. Article Google Scholar
Price EO. Behavioral development in animals undergoing domestication. Appl Anim Behav Sci. 1999;65(3):245–71. Article Google Scholar
Raisor MJ. Determining the antiquity of dog origins: canine domestication as a model for the consilience between molecular genetics and archaeology, vol. 1367. Oxford, UK: British Archaeological Reports Ltd; 2005. Google Scholar
Reed CA. Animal domestication in the prehistoric near east. Science. 1959;130(3389):1629–39. ArticleCASPubMed Google Scholar
Repenning CA, Brouwers EM. Late Pliocene-early Pleistocene ecologic changes in the Arctic Ocean borderland. US Government Printing Office; 1992. Google Scholar
Roy MS, Geffen E, Smith D, Ostrander EA, Wayne RK. Patterns of differentiation and hybridization in north American wolflike canids, revealed by analysis of microsatellite loci. Mol Biol Evol. 1994;11(4):553–70. CASPubMed Google Scholar
Ruvolo M, Pan D, Zehr S, Goldberg T, Disotell TR, von Dornum M. Gene trees and hominoid phylogeny. Proc Natl Acad Sci U S A. 1994;91(19):8900–4. ArticleCASPubMedPubMed Central Google Scholar
Sablin M, Khlopachev G. The earliest ice age dogs: evidence from Eliseevichi 11. Curr Anthropol. 2002;43(5):795–9. Article Google Scholar
Sacks BN, Brown SK, Stephens D, Pedersen NC, Wu J-T, Berry O. Y chromosome analysis of dingoes and Southeast Asian village dogs suggests a Neolithic continental expansion from Southeast Asia followed by multiple Austronesian dispersals. Mol Biol Evol. 2013;30(5):1103–18. ArticleCASPubMed Google Scholar
Sardella R, Bertè D, Iurino DA, Cherin M, Tagliacozzo A. The wolf from Grotta Romanelli (Apulia, Italy) and its implications in the evolutionary history of Canis lupus in the late Pleistocene of southern Italy. Quat Int. 2014;328:179–95. Article Google Scholar
Savolainen P, Zhang Y-P, Luo J, Lundeberg J, Leitner T. Genetic evidence for an East Asian origin of domestic dogs. Science. 2002;298(5598):1610–3. ArticleCASPubMed Google Scholar
Savolainen P, Leitner T, Wilton AN, Matisoo-Smith E, Lundeberg J. A detailed picture of the origin of the Australian dingo, obtained from the study of mitochondrial DNA. Proc Natl Acad Sci U S A. 2004;101(33):12387–90. ArticleCASPubMedPubMed Central Google Scholar
Scott J, Fuller J. Dog behavior: the genetic basis. Chicago: University of Chicago Press; 1965. Google Scholar
Serpell J. Pet-keeping and animal domestication: a reappraisal. In: The walking larder: patterns of domestication, pastoralism, and predation. 1989. p. 10–21. Google Scholar
Shannon LM, Boyko RH, Castelhano M, Corey E, Hayward JJ, McLean C, White ME, Said MA, Anita BA, Bondjengo NI. Genetic structure in village dogs reveals a Central Asian domestication origin. Proc Natl Acad Sci. 2015;112(44):13639–44. ArticleCASPubMedPubMed Central Google Scholar
Shipman P. How do you kill 86 mammoths? Taphonomic investigations of mammoth megasites. Quat Int. 2015;359:38–46. Article Google Scholar
Skoglund P, Ersmark E, Palkopoulou E, Dalen L. Ancient wolf genome reveals an early divergence of domestic dog ancestors and admixture into high-latitude breeds. Curr Biol. 2015;25(11):1515–9. ArticleCASPubMed Google Scholar
Sotnikova M, Rook L. Dispersal of the Canini (Mammalia, Canidae: Caninae) across Eurasia during the late Miocene to early Pleistocene. Quat Int. 2010;212(2):86–97. Article Google Scholar
Street M. Ein Wiedersehen mit dem Hund von Bonn-Oberkassel. In: Hutterer R, editor. Animals in history: Archaeozoological papers in honour of Günter Nobis (1921–2002), Bonner Zoologische Beiträge, vol. 50. Bonn: Zoologisches Forschungsinstitut und Museum Alexander Koenig; 2002. Google Scholar
Street M, Napierala H, Janssens L. The late Paleolithic dog from Bonn-Oberkassel in context. The late glacial burial from Oberkassel revisited. Darmstadt: Verlag Phillip von Zabern; 2015. p. 253–74. Google Scholar
Tchernov E, Valla FF. Two new dogs, and other Natufian dogs, from the southern Levant. J Archaeol Sci. 1997;24(1):65–95. Article Google Scholar
Tedford RH, Wang X, Taylor BE. Phylogenetic systematics of the North American fossil caninae (Carnivora: Canidae). Bull Am Mus Nat Hist. 2009. Google Scholar
Thalmann O, Shapiro B, Cui P, Schuenemann VJ, Sawyer SK, Greenfield DL, Germonpré MB, Sablin MV, López-Giráldez F, Domingo-Roura X, Napierala H, Uerpmann H-P, Loponte DM, Acosta AA, Giemsch L, Schmitz RW, Worthington B, Buikstra JE, Druzhkova A, Graphodatsky AS, Ovodov ND, Wahlberg N, Freedman AH, Schweizer RM, Koepfli K-P, Leonard JA, Meyer M, Krause J, Pääbo S, Green RE, Wayne RK. Complete mitochondrial genomes of ancient Canids suggest a European origin of domestic dogs. Science. 2013;342(6160):871–4. ArticleCASPubMed Google Scholar
Tishkoff SA, Reed FA, Friedlaender FR, Ehret C, Ranciaro A, Froment A, Hirbo JB, Awomoyi AA, Bodo J-M, Doumbo O, Ibrahim M, Juma AT, Kotze MJ, Lema G, Moore JH, Mortensen H, Nyambo TB, Omar SA, Powell K, Pretorius GS, Smith MW, Thera MA, Wambebe C, Weber JL, Williams SM. The genetic structure and history of Africans and African Americans. Science. 2009;324(5930):1035–44. ArticleCASPubMedPubMed Central Google Scholar
Turnbull PF, Reed CA. The fauna from the terminal Pleistocene of Palegawra cave, a Zarzian occupation in northeastern Iraq. Fieldiana Anthropol. 1974;63:81–146. Google Scholar
Ucko PJ, Dimbleby GW. The domestication and exploitation of plants and animals. New Brunswick, NJ: Transaction Publishers; 2007. Google Scholar
van Asch B, Zhang A-B, Oskarsson MCR, Klütsch CFC, Amorim A, Savolainen P. Pre-Columbian origins of native American dog breeds, with only limited replacement by European dogs, confirmed by mtDNA analysis. Proc R Soc Lond B Biol Sci. 2013;280(1766):20131142. Google Scholar
Vigne J-D. L’humérus de chien magdalénien de Erralla (Gipuzkoa, Espagne) et la domestication tardiglaciaire du loup en Europe. Munibe. 2005;51:279–87. Google Scholar
Vilà C, Savolainen P, Maldonado JE, Amorim IR, Rice JE, Honeycutt RL, Crandall KA, Lundeberg J, Wayne RK. Multiple and ancient origins of the domestic dog. Science. 1997;276:1687–9. ArticlePubMed Google Scholar
von Holdt BM, Pollinger JP, Lohmueller KE, Han E, Parker HG, Quignon P, Degenhardt JD, Boyko AR, Earl DA, Auton A, Reynolds A, Bryc K, Brisbin A, Knowles JC, Mosher DS, Spady TC, Elkahloun A, Geffen E, Pilot M, Jedrzejewski W, Greco C, Randi E, Bannasch D, Wilton A, Shearman J, Musiani M, Cargill M, Jones PG, Qian Z, Huang W, Ding Z-L, Y-p Z, Bustamante CD, Ostrander EA, Novembre J, Wayne RK. Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature. 2010;464(7290):898–902. ArticleCAS Google Scholar
Wang G-D, Zhai W, Yang H-C, Fan R-X, Cao X, Zhong L, Wang L, Liu F, Wu H, Cheng L-G, Poyarkov AD, Poyarkov NA Jr, Tang S-S, Zhao W-M, Gao Y, Lv X-M, Irwin DM, Savolainen P, Wu C-I, Zhang Y-P. The genomics of selection in dogs and the parallel evolution between dogs and humans. Nat Commun. 2013;4:1860. ArticlePubMedCAS Google Scholar
Wayne RK. Limb morphology of domestic and wild canids: the influence of development on morphologic change. J Morphol. 1986;187(3):301–19. ArticleCASPubMed Google Scholar
Wayne RK, O’Brien SJ. Allozyme divergence within the Canidae. Syst Biol. 1987;36(4):339–55. Google Scholar
Wurster-Hill D, Centerwall W. The interrelationships of chromosome banding patterns in canids, mustelids, hyena, and felids. Cytogenet Genome Res. 1982;34(1–2):178–92. ArticleCAS Google Scholar
Xu S, Li S, Yang Y, Tan J, Lou H, Jin W, Yang L, Pan X, Wang J, Shen Y. A genome-wide search for signals of high-altitude adaptation in Tibetans. Mol Biol Evol. 2011;28(2):1003–11. ArticlePubMedCAS Google Scholar
Zeder MA. Archaeological approaches to documenting animal domestication. In: Documenting domestication: new genetic and archaeological paradigms. 2006. p. 171–80 Google Scholar