EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata (original) (raw)
References
Ahmad R, Struss D, Southwick SM (2003) Development and characterization of microsatellite markers in Citrus. J Am Soc Hortic Sci 128:584–590 CAS Google Scholar
Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208–218 CAS Google Scholar
Cai Q, Guy CL, Moore GA (1994) Extension of the genetic linkage map in Citrus using random amplified polymorphic DNA (RAPD) markers and RFLP mapping of cold-acclimation responsive loci. Theor Appl Genet 89:606–614 ArticleCAS Google Scholar
Cameron JW, Soost RK (1984) Citrus. In: Simmonds NW (ed) Evolution of crop plants. Logman, New York, pp 261–264 Google Scholar
Chen C, Zhou P, Choi YA, Huang S, Gmitter Jr FG (2006a) Mining and characterizing microsatellites from citrus ESTs. Theor Appl Genet 112:1248–1257 ArticlePubMedCAS Google Scholar
Chen C, Burrage AD, Choi YA, Soneji JR, Rao MN, Huang S, Gmitter Jr FG (2006b) Aligning citrus unigenes with Arabidopsis and rice chromosome sequences. Plant & Animal Genomes XIV Conference, San Diego, CA, USA, p 97
Cheng FS, Roose ML (1995) Origin and inheritance of dwarfing by citrus rootstock Poncirus trifoliata ‘Flying Dragon’. J Am Soc Hortic Sci 120:286–291 Google Scholar
Choi YA, Chen C, Huang S, Gmitter FG Jr (2005) Quantitative trait linkage (QTL) mapping for resistance to citrus canker within Citrus. The 2nd International Canker/Huanlongbin Workshop, Orlando, FL, USA, Poster 10
Close TJ, Wanamaker S, Lyon M, Mei GW, Davies C, Roose ML (2006) A genechip® for citrus. In: Plant & Animal Genomes XIV Conf, San Diego, CA, USA, Workshop, p 82
Cristofani M, Machado MA, Grattapaglia D (1999) Genetic linkage maps of Citrus sunki Hort. ex. Tan. and Poncirus trifoliata (L.) Raf. and mapping of citrus tristeza virus resistance gene. Euphytica 109:25–32 ArticleCAS Google Scholar
Dalkilic Z, Timmer LW, Gmitter FG Jr (2005) Linkage of Alternaria disease resistance gene in mandarin hybrids with RAPD fragments. J Am Soc Hortic Sci 130:191–195 CAS Google Scholar
Deng Z, Huang S, Xiao S, Gmitter FG Jr (1997) Development and characterization of SCAR markers linked to the citrus tristeza virus resistance gene from Poncirus trifoliata. Genome 40:697–704 CAS Google Scholar
Deng Z, Huang S, Ling P, Yu C, Tao Q, Chen C, Wendell MK, Zhang HB, Gmitter FG Jr (2001) Fine genetic mapping and BAC contig development for the citrus tristeza virus resistance gene locus in Poncirus trifoliata (Raf.). Mol Genet Genomics 265:739–747 ArticlePubMedCAS Google Scholar
Durham RE, Liou PC, Gmitter Jr FG, Moore GA (1992) Linkage of restriction fragment length polymorphisms and isozymes in Citrus. Theor Appl Genet 84:39–48 ArticleCAS Google Scholar
Fang DQ, Federici CT, Roose ML (1997) Development of molecular markers linked to a gene controlling fruit acidity in citrus. Genome 40:841–849 CAS Google Scholar
Fang DQ, Federici CT, Roose ML (1998) A high-resolution linkage map of the citrus tristeza virus resistance gene region in Poncirus trifoliata (L.) Raf. Genetics 150:883–890 PubMedCAS Google Scholar
Garcia R, Asins MJ, Forner J, Carbonell EA (1999) Genetic analysis of apomixis in Citrus and Poncirus by molecular markers. Theor Appl Genet 99:511–518 ArticleCAS Google Scholar
Garcia R, Asins MJ, Carbonell EA (2000) QTL analysis of yield and seed number in Citrus. Theor Appl Genet 101:487–493 ArticleCAS Google Scholar
Gmitter FG Jr (1994) Contemporary approaches to improving citrus cultivars. HortTechnology 4:206–210 Google Scholar
Gmitter FG Jr, Xiao SY, Huang S, Hu XL, Garnsey SM, Deng Z (1996) A localized linkage map of the citrus tristeza virus resistance gene region. Theor Appl Genet 92:688–695 ArticleCAS Google Scholar
Gonzalo MJ, Oliver M, Garcia-Mas J, Monfort A, Dolcet-Sanjuan R, Katzir N, Arus P, Monforte AJ (2005) Simple-sequence repeat markers used in merging linkage maps of melon (Cucumis melo L.). Theor Appl Genet 110:802–811 ArticlePubMedCAS Google Scholar
Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 137:1121–1137 PubMedCAS Google Scholar
Hulbert SH, Ilott TW, Legg EJ, Lincoln SE, Lander ES, Michelmore RW (1988) Genetic analysis of the fungus, Bremia lactucae, using restriction fragment length polymorphisms. Genetics 120:947–958 PubMedCAS Google Scholar
Jarrell DC, Roose ML, Traugh SN, Kupper RS (1992) A genetic map of citrus based on the segregation of isozymes and RFLPs in an intergeneric cross. Theor Appl Genet 84:49–56 ArticleCAS Google Scholar
Kepiro JL, Roose ML (2000) Molecular genetic analysis of nucellar embryony (apomixis) in Citrus maxima X Poncirus trifoliata using AFLP. In: Proc Intl Soc Citricult, Vol 1, 3–7 Dec, 2000, Orlando, Florida, USA, p 212
Kijas JM, Fowler JC, Thomas MR (1995) An evaluation of sequence tagged microsatellite site markers for genetic analysis within Citrus and related species. Genome 38:349–355 PubMedCAS Google Scholar
Kijas JMH, Thomas MR, Fowler JCS, Roose ML (1997) Integration of trinucleotide microsatellites into a linkage map of Citrus. Theor Appl Genet 94:701–706 ArticleCAS Google Scholar
Lander ES, Green P, Abrahamson J, Barlow A, Daley M, Lincoln S, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181 ArticlePubMedCAS Google Scholar
Ling P, Yu C, Deng Z, Chen C, Huang S, Wendell MK, Gmitter Jr FG (1999) Citrus genome mapping with AFLP markers. In: Plant & Animal Genomes XIII Conf, San Diego, CA, USA, Poster 189
Ling P, Duncan LW, Deng Z, Dunn D, Xu X, Huang S, Gmitter Jr FG (2000) Inheritance of citrus nematode resistance and its linkage with molecular markers. Theor Appl Genet 101:1010–1017 Article Google Scholar
Liou PC (1990) A molecular study of the Citrus genome through analysis of restriction fragment length polymorphism and isozyme mapping. Ph.D. Dissertation. University of Florida, Gainseville, USA
Lodhi MA, Daly MJ, Ye GN, Weeden NF, Reisch BI (1995) A molecular marker based linkage map of Vitis. Genome 38:786–794 PubMedCAS Google Scholar
Luro F, Laigret F, Lorieux M, Ollitrault P (1996) Citrus genome mapping with molecular markers: two maps obtained by segregation analysis of progeny of one intergeneric cross. Proc Intl Soc Citricult 2:862–866 Google Scholar
Nicolosi E, Deng ZN, Gentile A, La Malfa S, Continella G, Tribulato E (2000) Citrus phylogeny and genetic origin of important species as investigated by molecular markers. Theor Appl Genet 100:1155–1166 ArticleCAS Google Scholar
de Oliveira RP, Cristofani M, Machado MA (2002) Genetic mapping for citrus variegated chlorosis resistance. Laranja 23:247–261 Google Scholar
Omura M, Ueda T, Kita M, Komatsu A, Takanokura Y, Shimada T, Endo-Inagaki T, Nesumi H, Yoshida T (2000) EST Mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress. Orlando, FL, USA. pp 71–74
Ritter E, Gebhardt C, Salamini F (1990) Estimation of recombination frequencies and construction of RFLP linkage maps in plants from crosses between heterozygous parents. Genetics 125:645–654 PubMedCAS Google Scholar
Ruiz C, Asins MJ (2003) Comparison between Poncirus and Citrus genetic linkage maps. Theor Appl Genet 106:826–836 PubMedCAS Google Scholar
Sankar AA, Moore GA (2001) Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map. Theor Appl Genet 102:206–214 ArticleCAS Google Scholar
Scora RW (1988) Biochemistry, taxonomy and evolution of modern cultivated citrus. In: Goren R, Mendel K (eds) Citriculture. Proc Intl Soc Citricult, pp 227–289
de Simone M, Russo MP, Puelo G, Marsan PA, Lorenzoni C, Marocco A, Recupero GR (1998) Construction of genetic maps for Citrus aurantium and C. latipes based on AFLP, RAPD and RFLP markers. Fruits 53:383–390 Google Scholar
Siviero A, Cristofani M, Machado M-A (2003) QTL mapping associated with rooting of stem cuttings from Citrus sunki x Poncirus trifoliata hybrids. Crop Breed Appl Biotech 3:83–88 Google Scholar
Soost RK, Cameron JW (1975) Citrus. In: Janick J, Moore JN (eds) Advances in fruit breeding. Purdue University, West Lafayette, Indiana, USA, pp 507–540 Google Scholar
Soost RK, Roose ML (1996) Citrus. In: Janick J, Moore JN (eds) Fruit breeding. Wiley, New York, USA, pp 257–323 Google Scholar
Stam P, Van Ooijen JW (1995) JoinMap (TM) version 2.0: software for the calculation of genetic linkage maps. CPRO-DLO, Wageningen Google Scholar
Swingle WT, Reece PC (1967) The botany of citrus and its wild relatives. In: Reuther W, Webber HJ, Batchelor LD (eds) The Citrus Industry, Vol 1 (rev). Univ of California Press, Berkley, CA, USA, pp 190–430 Google Scholar
Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411–422 PubMedCAS Google Scholar
Torres AM, Mau-Lastovicka T, Williams TE, Soost RK (1985) Segregation distortion and linkage of citrus and Poncirus isozyme genes. J Hered 76:289–294 CAS Google Scholar
Tozlu I, Guy CL, Moore GA (1999a) QTL analysis of Na+ and Cl− accumulation related traits in an intergeneric BC1 progeny of Citrus and Poncirus under saline and nonsaline environments. Genome 42:692–705 ArticleCAS Google Scholar
Tozlu I, Guy CL, Moore GA (1999b) QTL analysis of morphological traits in an intergeneric BC1 progeny of Citrus and Poncirus under saline and nonsaline environments. Genome 42:1020–1029 ArticleCAS Google Scholar
Van Ooijen JW, Voorrips RE (2001) JoinMap® 3.0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands Google Scholar
Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Heredity 93:77–78 ArticleCAS Google Scholar
Weber CA, Moore GA, Deng Z, Gmitter FG Jr (2003) Mapping freeze tolerance quantitative trait loci in a Citrus grandis X Poncirus trifoliata F1 pseudo-testcross using molecular markers. J Am Soc Hortic Sci 128:508–514 CAS Google Scholar
Yu J-K, La Rota EM, Kantety EV, Sorrells ME (2004) EST derived SSR markers for comparative mapping in wheat and rice. Mol Gen Genomics 271:742–751 ArticleCAS Google Scholar