Ancient origin of the Hox gene cluster (original) (raw)

References

  1. De Rosa, R. et al. Hox genes in brachiopods and priapulids and protostome evolution . Nature 399, 772–776 (1999).
    Article CAS PubMed Google Scholar
  2. Finnerty, J. R. & Martindale, M. Q. The evolution of the Hox cluster: insights from outgroups. Curr. Opin. Genet. Dev. 8, 681–687 ( 1998).
    Article CAS PubMed Google Scholar
  3. Bridge, D., Cunningham, C. W., Schierwater, B., DeSalle, R. & Buss, L. W. Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure. Proc. Natl Acad. Sci. USA 89, 8750– 8753 (1992).
    Article CAS PubMed PubMed Central Google Scholar
  4. Bridge, D., Cunningham, C. W., DeSalle, R. & Buss, L. W. Class-level relationships in the phylum Cnidaria: molecular and morphological evidence. Mol. Biol. Evol. 12, 679– 689 (1995).
    CAS PubMed Google Scholar
  5. Kim, J., Kim, W. & Cunningham, C. W. A new perspective on lower metazoan relationships from 18S rDNA sequences. Mol. Biol. Evol. 16, 423–427 (1999).
    Article CAS PubMed Google Scholar
  6. Miller, D. J. & Ball, E. E. The coral Acropora: what it can contribute to our knowledge of metazoan evolution and the evolution of developmental processes. BioEssays 22, 291–296 (2000).
    Article CAS PubMed Google Scholar
  7. Murtha, M. T., Leckman, J. F. & Ruddle, F. H. Detection of homeobox genes in development and evolution . Proc. Natl Acad. Sci. USA 88, 10711– 10715 (1991).
    Article CAS PubMed PubMed Central Google Scholar
  8. Schierwater, B., Murtha, M., Dick, M., Ruddle, F. H. & Buss, L. W. Homeoboxes in cnidarians. J. Exp. Zool. 260, 413–416 ( 1991).
    Article CAS PubMed Google Scholar
  9. Schummer, M., Scheurlen, I., Schaller, C. & Galliot, B. HOM/HOX homeobox genes are present in hydra (Chlorohydra viridissima) and are differentially expressed during regeneration. EMBO J. 11, 1815–1823 (1992).
    Article CAS PubMed PubMed Central Google Scholar
  10. Gauchat, D. et al. Evolution of Antp-class genes and differential expression of Hydra Hox/ParaHox genes in anterior patterning. Proc. Natl Acad. Sci USA 97, 4493–4498 ( 2000).Provides a thorough phylogenetic analysis of the cnidarian Hox-like genes relative to bilaterian homeobox sequences.
    Article CAS PubMed PubMed Central Google Scholar
  11. Brooke, N. M., Garcia-Fernàndez, J. & Holland, P. W. H. The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster. Nature 392, 920–922 (1998).Describes the discovery of the ParaHox cluster and the original formulation of the hypothesis that the Hox and ParaHox genes derived from duplication and divergence from an ancestral ProtoHox cluster.
    Article CAS PubMed Google Scholar
  12. Finnerty, J. R. Homeoboxes in sea anemones and other nonbilaterian animals: implications for the evolution of the Hox cluster and the Zootype. Curr. Top. Dev. Biol. 40, 211–254 ( 1998).
    Article CAS PubMed Google Scholar
  13. Finnerty, J. R. & Martindale, M. Q. Ancient origins of axial patterning genes: Hox genes and ParaHox genes in the Cnidaria . Evol. Dev. 1, 16–23 (1999).The first clear statement that cnidarians have ParaHox genes.
    Article CAS PubMed Google Scholar
  14. Schierwater, B. & Kuhn, K. Homology of Hox genes and the Zootype concept in early metazoan evolution. Mol. Phyl. Evol. 9, 375–381 ( 1998).
    Article CAS Google Scholar
  15. Miller, D. J. & Miles, A. Homeobox genes and the Zootype. Nature 365, 215–216 ( 1993).Showed the physical linkage of cnidarian homeobox genes, possibly representing at least part of a cnidarian Hox gene cluster.
    Article CAS PubMed Google Scholar
  16. Pennisi, E. An integrative science finds a home. Science 287, 570–572 (2000).
    Article CAS PubMed Google Scholar
  17. Masuda-Nakagawa, L. M., Gröger, H., Aerne, B. L. & Schmid, V. The Hox-like gene Cnox2-Pc is expressed at the anterior region in all life cycle stages of the jellyfish Podocoryne carnea. Dev. Genes Evol. 210, 151–156 (2000).
    Article CAS PubMed Google Scholar
  18. Martinez, P., Rast, J. P., Arenas-Mena, C. & Davidson, E. H. Organization of an echinoderm Hox gene cluster. Proc. Natl Acad. Sci. USA 96, 1469–1474 (1999).
    Article CAS PubMed PubMed Central Google Scholar
  19. Aparicio, S. et al. Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes. Nature Genet. 16, 79–83 ( 1997).
    Article CAS PubMed Google Scholar
  20. Izpisúa-Belmonte, J. -C., Falkenstein, H., Dollé, P., Renucci, A. & Duboule, D. Murine genes related to Drosophila AbdB homeotic gene are sequentially expressed during development of the posterior part of the body. EMBO J. 10, 2279–2289 ( 1991).
    Article PubMed PubMed Central Google Scholar
  21. Ferrier, D. E. K., Minguillón, C., Holland, P. W. H. & Garcia-Fernàndez, J. The amphioxus Hox cluster: deuterostome Posterior Flexibility and Hox14. Evol. Dev. 2, 284– 293 (2000).
    Article CAS PubMed Google Scholar
  22. Stauber, M., Jäckle, H. & Schmidt-Ott, U. The anterior determinant bicoid of Drosophila is a derived Hox class 3 gene. Proc. Natl Acad. Sci. USA 96, 3786–3789 ( 1999).
    Article CAS PubMed PubMed Central Google Scholar
  23. Smith, S. T. & Jaynes, J. B. A conserved region of engrailed, shared among all en-, gsc-, NK1-, NK2- and msh-class homeoproteins, mediates transcriptional repression in vivo. Development 122, 3141–3150 (1996).
    CAS PubMed Google Scholar
  24. Williams, N. A. & Holland, P. W. H. An amphioxus Emx gene reveals duplication during vertebrate evolution. Mol. Biol. Evol. 17, 1520–1528 (2000).
    Article CAS PubMed Google Scholar
  25. Degnan, B. M., Degnan, S. M., Giusti, A. & Morse, D. E. A hox/hom homeobox gene in sponges. Gene 155 , 175–177 (1995).
    Article CAS PubMed Google Scholar
  26. Seimiya, M., Ishiguro, H., Miura, K., Watanabe, Y. & Kurosawa, Y. Homeobox-containing genes in the most primitive metazoa, the sponges. Eur. J. Biochem. 221, 219– 225 (1994).
    Article CAS PubMed Google Scholar
  27. Finnerty, J. R. et al. Homeobox genes in the Ctenophora: identification of paired -type and Hox homologues in the atentaculate ctenophore, Beroë ovata. Mol. Mar. Biol. Biotech. 5, 249 –258 (1996).
    CAS Google Scholar
  28. Bateson, W. Materials for the Study of Variation (McMillan & Co., London, 1894).
    Google Scholar
  29. Lewis, E. B. A gene complex controlling segmentation in Drosophila. Nature 276, 565–570 ( 1978).
    Article CAS PubMed Google Scholar
  30. Kaufman, T. C., Lewis, R. & Wakimoto, B. Cytogenetic analysis of chromosome 3 in Drosophila melanogaster: the homeotic gene complex in polytene chromosome interval 84A–B. Genetics 94, 115– 133 (1980).
    CAS PubMed PubMed Central Google Scholar
  31. Sanchez-Herrero, E., Vernos, I., Marco, R. & Morata, G. Genetic organization of Drosophila bithorax complex. Nature 313, 108–113 (1985).
    Article CAS PubMed Google Scholar
  32. Gehring, W. The homeo box: a key to the understanding of development? Cell 40, 3–5 (1985 ).
    Article CAS PubMed Google Scholar
  33. McGinnis, W. A century of homeosis, a decade of homeoboxes. Genetics 137, 607–611 (1994).
    CAS PubMed PubMed Central Google Scholar
  34. Graham, A., Papalopulu, N. & Krumlauf, R. The murine and Drosophila homeobox gene complexes have common features of organisation and expression. Cell 57, 367–378 (1989).
    Article CAS PubMed Google Scholar
  35. Duboule, D. & Dollé, P. The structural and functional organization of the murine HOX gene family resembles that of Drosophila homeotic genes. EMBO J. 8, 1497– 1505 (1989).
    Article CAS PubMed PubMed Central Google Scholar
  36. Beeman, R. A homeotic gene cluster in the red flour beetle. Nature 327, 247–249 (1987).
    Article Google Scholar
  37. Ueno, K., Hui, C-C., Fukuta, M. & Suzuki, Y. Molecular analysis of the deletion mutants in the E homeotic complex of the silkworm Bombyx mori. Development 114, 555– 563 (1992).
    CAS PubMed Google Scholar
  38. Ferrier, D. E. K. & Akam, M. E. Organization of the Hox gene cluster in the grasshopper, Schistocerca gregaria. Proc. Natl Acad. Sci. USA 93, 13024– 13029 (1996).
    Article CAS PubMed PubMed Central Google Scholar
  39. Bürglin, T. R. et al. Nematode homeobox cluster. Nature 351 , 703 (1991).
    Article PubMed Google Scholar
  40. Kmita-Cunisse, M., Loosli, F., Bièrne, J. & Gehring, W. J. Homeobox genes in the ribbonworm Lineus sanguineus: evolutionary implications . Proc. Natl Acad. Sci. USA 95, 3030– 3035 (1998).
    Article CAS PubMed PubMed Central Google Scholar
  41. Garcia-Fernàndez, J. & Holland, P. W. H. Archetypal organisation of the amphioxus Hox gene cluster. Nature 370, 563–566 (1994).
    Article PubMed Google Scholar
  42. Popodi, E., Kissinger, J. C., Andrews, M. E. & Raff, R. A. Sea urchin Hox genes: insights into the ancestral Hox cluster. Mol. Biol. Evol. 13, 1078–1086 (1996).
    Article CAS PubMed Google Scholar
  43. Pollard, S. L. & Holland, P. W. H. Evidence for 14 homeobox gene clusters in human genome ancestry. Curr. Biol. 10, 1059–1062 ( 2000).
    Article CAS PubMed Google Scholar
  44. Holland, P. W. H. The future of evolutionary biology. Nature 402, C41–C44 (1999).
    Article CAS PubMed Google Scholar
  45. Finnerty, J. R. & Martindale, M. Q. Homeoboxes in sea anemones (Cnidaria; Anthozoa): a PCR-based survey of Nematostella vectensis and Metridium senile. Biol. Bull. 193, 62–76 (1997).
    Article CAS PubMed Google Scholar
  46. Kuhn, K., Streit, B. & Schierwater, B. Isolation of Hox genes from the Scyphozoan Cassiopeia xamachana: implications for the early evolution of Hox genes. J. Exp. Zool. (Mol. Dev. Evol.) 285, 63– 75 (1999).
    Article CAS Google Scholar
  47. Naito, M., Ishiguro, H., Fujisawa, T. & Kurosawa, Y. Presence of eight distinct homeobox-containing genes in cnidarians. FEBS Lett. 333, 271–274 (1993).
    Article CAS PubMed Google Scholar
  48. Kuhn, K., Streit, B. & Schierwater, B. Homeobox genes in the cnidarian Eleutheria dichotoma : evolutionary implications for the origin of _Antennapedia_-class (HOM/Hox) genes. Mol. Phyl. Evol. 6, 30– 38 (1996).
    Article CAS Google Scholar
  49. Shenk, M. A., Bode, H. R. & Steele, R. E. Expression of Cnox-2, a HOM/HOX homeobox gene in hydra, is correlated with axial pattern formation. Development 117, 657–667 ( 1993).
    CAS PubMed Google Scholar
  50. Cartwright, P., Bowsher, J. & Buss, L. W. Expression of a Hox gene, Cnox-2, and the division of labor in a colonial hydroid. Proc. Natl Acad. Sci USA. 96, 2183–2186 (1999).
    Article CAS PubMed PubMed Central Google Scholar
  51. Aerne, B. L., Baader, C. D. & Schmid, V. Life stage and tissue-specific expression of the homeobox gene cnox1-Pc of the hydrozoan Podocoryne carnea. Dev. Biol. 169, 547–556 (1995).
    Article CAS PubMed Google Scholar
  52. Wallace, C. C. Staghorn Corals of the World: A Revision of the Coral Genus Acropora (Scleractinia; Astrocoeniina; Acroporidae) Worldwide, with Emphasis on Morphology, Phylogeny and Biogeography (CSIRO Publishing, Collingwood, New South Wales, Australia, 1999).

Download references