Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays (original) (raw)
Wang, D.G. et al. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science280, 1077–1082 (1998). ArticleCAS Google Scholar
Ruvolo, M. A new approach to studying modern human origins: hypothesis testing with coalescence time distributions. Mol. Phylogenet. Evol.5, 202–219 (1996). ArticleCAS Google Scholar
Goodman, M. et al. Toward a phylogenetic classification of primates based on DNA evidence complemented by fossil evidence. Mol. Phylogenet. Evol.9, 585–598 ( 1998). ArticleCAS Google Scholar
Hacia, J.G. et al. Evolutionary sequence comparisons using high-density oligonucleotide arrays. Nature Genet.18, 155– 158 (1998). ArticleCAS Google Scholar
Savatier, P. et al. Evolution of the primate β-globin gene region. High rate of variation in CpG dinucleotides and in short repeated sequences between man and chimpanzee. J. Mol. Biol.182, 21 –29 (1985). ArticleCAS Google Scholar
Sved, J. & Bird, A. The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. Proc. Natl Acad. Sci. USA12, 4692–4696 (1990). Article Google Scholar
Yang, A.S. et al. The rate of CpG mutation in Alu repetitive elements within the p53 tumor suppressor gene in the primate germline. J. Mol. Biol.258, 240–250 ( 1996). ArticleCAS Google Scholar
Watterson, G.A. & Guess, H.A. Is the most frequent allele the oldest? Theor. Popul. Biol.11, 141–160 (1977). ArticleCAS Google Scholar
Watkins, D.I. The evolution of major histocompatibility class I genes in primates. Crit. Rev. Immunol.15, 1–29 (1995). ArticleCAS Google Scholar
Brown, W.M., Prager, E.M., Wang, A. & Wilson, A.C. Mitochondrial DNA sequences of primates: tempo and mode of evolution. J. Mol. Evol.18, 225–239 ( 1982). ArticleCAS Google Scholar
Garner, K.J. & Ryder, O.A. Mitochondrial DNA diversity in gorillas. Mol. Phylogenet. Evol.6, 39– 48 (1996). ArticleCAS Google Scholar
Crouau-Roy, B., Service, S., Slatkin, M. & Freimer, N. A fine-scale comparison of the human and chimpanzee genomes: linkage, linkage disequilibrium and sequence analysis. Hum. Mol. Genet.5, 1131– 1137 (1996). ArticleCAS Google Scholar
Wise, C.A., Sraml, M., Rubinsztein, D.C. & Easteal, S. Comparative nuclear and mitochondrial genome diversity in humans and chimpanzees. Mol. Biol. Evol.14, 707– 716 (1997). ArticleCAS Google Scholar
Cooper, G., Rubinsztein, D.C. & Amos, W. Ascertainment bias cannot entirely account for human microsatellites being longer than their chimpanzee homologues. Hum. Mol. Genet.7, 1425–1429 (1998). ArticleCAS Google Scholar
Mountain, J.L. & Cavalli-Sforza, L.L. Inference of human evolution through cladistic analysis of nuclear DNA restriction polymorphisms. Proc. Natl Acad. Sci. USA91, 6515– 6519 (1994). ArticleCAS Google Scholar
Martinko, J.M., Vincek, V., Klein, D. & Klein, J. Primate ABO glycotransferases: evidence for trans-species evolution. Immunogenetics37, 274–278 (1993). ArticleCAS Google Scholar
Deeb, S.S., Jorgensen, A.L., Battisti, L., Iwasaki, L. & Motulsky, A.G. Sequence divergence of the red and green visual pigments in great apes and humans. Proc. Natl Acad. Sci. USA91, 7262–7266 (1994). ArticleCAS Google Scholar
Jaeger, E.E.M. et al. Characterization of chimpanzee TCRV gene polymorphism: how old are human TCRV alleles? Immunogenetics47, 115–123 (1998). ArticleCAS Google Scholar
Kimura, M. The Neutral Theory of Molecular Evolution (Cambridge University Press, Cambridge, 1983). Book Google Scholar
Bergstrom, T.F., Josefsson, A., Erlich, H.A. & Gyllensten, U. Recent origin of _HLA_-DRB1 alleles and implications for human evolution. Nature Genet.18, 237– 242 (1998). ArticleCAS Google Scholar
Clark, A.G. Neutral behavior of shared polymorphism. Proc. Natl Acad. Sci. USA94, 7730–7734 ( 1997). ArticleCAS Google Scholar
Chee, M.S. et al. Accessing genetic information with high-density DNA arrays. Science274, 610–614 (1996). ArticleCAS Google Scholar
Hacia, J.G. et al. Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis. Nature Genet.14, 441– 447 (1996). ArticleCAS Google Scholar
Morin, P.A. et al. Kin selection, social structure, gene flow, and the evolution of chimpanzees. Science265, 1193– 1201 (1994). ArticleCAS Google Scholar
Collins, F.S., Guyer, M.S. & Chakravarti, A. Variations on a theme: cataloging human DNA sequence variation. Science278, 1580– 1581 (1997). ArticleCAS Google Scholar
Kruglyak, L. The use of a genetic map of biallelic markers in linkage studies. Nature Genet.17, 21–24 (1997). ArticleCAS Google Scholar
Nickerson D.A. et al. DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene. Nature Genet.19, 233– 240 (1998). ArticleCAS Google Scholar
Lai, E., Riley, J., Purvis, I. & Roses, A. A 4-Mb high-density single nucleotide polymorphism-based map around human APOE. Genomics54, 31–38 ( 1998). ArticleCAS Google Scholar