RNA interference screen for human genes associated with West Nile virus infection (original) (raw)

• Brinton, M. A. The molecular biology of West Nile Virus: A new invader of the western hemisphere. Annu. Rev. Microbiol. 56, 371–402 (2002)
  Article CAS Google Scholar
• Chu, J. J. & Ng, M. L. Infectious entry of West Nile virus occurs through a clathrin-mediated endocytic pathway. J. Virol. 78, 10543–10555 (2004)
  Article CAS Google Scholar
• Krishnan, M. N. et al. Rab 5 is required for the cellular entry of dengue and West Nile viruses. J. Virol. 81, 4881–4885 (2007)
  Article CAS Google Scholar
• Brass, A. L. et al. Identification of host proteins required for HIV infection through a functional genomic screen. Science 319, 921–926 (2008)
  Article ADS CAS Google Scholar
• Ng, T. I. et al. Identification of host genes involved in hepatitis C virus replication by small interfering RNA technology. Hepatology 45, 1413–1421 (2007)
  Article CAS Google Scholar
• Pelkmans, L. et al. Genome-wide analysis of human kinases in clathrin- and caveolae/raft-mediated endocytosis. Nature 436, 78–86 (2005)
  Article ADS CAS Google Scholar
• Davis, W. G., Blackwell, J. L., Shi, P. Y. & Brinton, M. A. Interaction between the cellular protein eEF1A and the 3′-terminal stem-loop of West Nile virus genomic RNA facilitates viral minus-strand RNA synthesis. J. Virol. 81, 10172–10187 (2007)
  Article CAS Google Scholar
• Emara, M. M. & Brinton, M. A. Interaction of TIA-1/TIAR with West Nile and dengue virus products in infected cells interferes with stress granule formation and processing body assembly. Proc. Natl Acad. Sci. USA 104, 9041–9046 (2007)
  Article ADS CAS Google Scholar
• Hirsch, A. J. et al. The Src family kinase c-Yes is required for maturation of West Nile virus particles. J. Virol. 79, 11943–11951 (2005)
  Article CAS Google Scholar
• Mackenzie, J. M., Khromykh, A. A. & Parton, R. G. Cholesterol manipulation by West Nile virus perturbs the cellular immune response. Cell Host Microbe 2, 229–239 (2007)
  Article CAS Google Scholar
• Fredericksen, B. L., Smith, M., Katze, M. G., Shi, P. Y. & Gale, M. The host response to West Nile Virus infection limits viral spread through the activation of the interferon regulatory factor 3 pathway. J. Virol. 78, 7737–7747 (2004)
  Article CAS Google Scholar
• Lim, J. et al. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. Cell 125, 801–814 (2006)
  Article CAS Google Scholar
• Mashimo, T. et al. A nonsense mutation in the gene encoding 2′-5′-oligoadenylate synthetase/L1 isoform is associated with West Nile virus susceptibility in laboratory mice. Proc. Natl Acad. Sci. USA 99, 11311–11316 (2002)
  Article ADS CAS Google Scholar
• Samuel, M. A. et al. PKR and RNase L contribute to protection against lethal West Nile Virus infection by controlling early viral spread in the periphery and replication in neurons. J. Virol. 80, 7009–7019 (2006)
  Article CAS Google Scholar
• Scherbik, S. V., Paranjape, J. M., Stockman, B. M., Silverman, R. H. & Brinton, M. A. RNase L plays a role in the antiviral response to West Nile virus. J. Virol. 80, 2987–2999 (2006)
  Article CAS Google Scholar
• Tecle, T., White, M. R., Gantz, D., Crouch, E. C. & Hartshorn, K. L. Human neutrophil defensins increase neutrophil uptake of influenza A virus and bacteria and modify virus-induced respiratory burst responses. J. Immunol. 178, 8046–8052 (2007)
  Article CAS Google Scholar
• Fujita, Y. et al. Hakai, a c-Cbl-like protein, ubiquitinates and induces endocytosis of the E-cadherin complex. Nature Cell Biol. 4, 222–231 (2002)
  Article CAS Google Scholar
• Dell'Angelica, E. C. et al. AP-3: An adaptor-like protein complex with ubiquitous expression. EMBO J. 16, 917–928 (1997)
  Article CAS Google Scholar
• Khor, R., McElroy, L. J. & Whittaker, G. R. The ubiquitin-vacuolar protein sorting system is selectively required during entry of influenza virus into host cells. Traffic 4, 857–868 (2003)
  Article CAS Google Scholar
• Meusser, B., Hirsch, C., Jarosch, E. & Sommer, T. ERAD: The long road to destruction. Nature Cell Biol. 7, 766–772 (2005)
  Article CAS Google Scholar
• Wakana, Y. et al. Bap31 is an itinerant protein that moves between the peripheral ER and a juxtanuclear compartment related to ER-associated degradation. Mol. Biol. Cell 19, 1825–1836 (2008)
  Article CAS Google Scholar
• Schelhaas, M. et al. Simian Virus 40 depends on ER protein folding and quality control factors for entry into host cells. Cell 131, 516–529 (2007)
  Article CAS Google Scholar
• Halestrap, A. P. & Price, N. T. The proton-linked monocarboxylate transporter (MCT) family: Structure, function and regulation. Biochem. J. 343, 281–299 (1999)
  Article CAS Google Scholar
• Chiu, M. W., Shih, H. M., Yang, T. H. & Yang, Y. L. The type 2 dengue virus envelope protein interacts with small ubiquitin-like modifier-1 (SUMO-1) conjugating enzyme 9 (Ubc9). J. Biomed. Sci. 14, 429–444 (2007)
  Article CAS Google Scholar
• Hanks, S. K., Ryzhova, L., Shin, N. Y. & Brabek, J. Focal adhesion kinase signaling activities and their implications in the control of cell survival and motility. Front. Biosci. 8, d982–d996 (2003)
  Article CAS Google Scholar
• Mi, H. et al. The PANTHER database of protein families, subfamilies, functions and pathways. Nucleic Acids Res. 33, D284–D288 (2005)
  Article CAS Google Scholar
• Su, A. I. et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl Acad. Sci. USA 101, 6062–6067 (2004)
  Article ADS CAS Google Scholar
• Mishra, G. R. et al. Human protein reference database — 2006 update. Nucleic Acids Res. 34, D411–D414 (2006)
  Article CAS Google Scholar
• Bader, G. D., Betel, D. & Hogue, C. W. BIND: The Biomolecular Interaction Network Database. Nucleic Acids Res. 31, 248–250 (2003)
  Article CAS Google Scholar
• Scholle, F. & Mason, P. W. West Nile virus replication interferes with both poly(I:C)-induced interferon gene transcription and response to interferon treatment. Virology 342, 77–87 (2005)
  Article CAS Google Scholar
• Rossi, S. L., Zhao, Q., O'Donnell, V. K. & Mason, P. W. Adaptation of West Nile virus replicons to cells in culture and use of replicon-bearing cells to probe antiviral action. Virology 331, 457–470 (2005)
  Article CAS Google Scholar
• Helenius, A., Kartenbeck, J., Simons, K. & Fries, E. On the entry of Semliki forest virus into BHK-21 cells. J. Cell Biol. 84, 404–420 (1980)
  Article CAS Google Scholar
• Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA 95, 14863–14868 (1998)
  Article ADS CAS Google Scholar
• Saldanha, A. J. Java Treeview — extensible visualization of microarray data. Bioinformatics 20, 3246–3248 (2004)
  Article CAS Google Scholar