Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions (original) (raw)

• Reppert, S.M. & Weaver, D.R. Coordination of circadian timing in mammals. Nature 418, 935–941 (2002).
  Article CAS Google Scholar
• Albrecht, U. The mammalian circadian clock: a network of gene expression. Front. Biosci. 9, 48–55 (2004).
  Article CAS Google Scholar
• Lowrey, P.L. & Takahashi, J.S. Genetics of the mammalian circadian system: Photic entrainment, circadian pacemaker mechanisms, and posttranslational regulation. Annu. Rev. Genet. 34, 533–562 (2000).
  Article CAS Google Scholar
• Wuarin, J. & Schibler, U. Expression of the liver-enriched transcriptional activator protein DBP follows a stringent circadian rhythm. Cell 63, 1257–1266 (1990).
  Article CAS Google Scholar
• Lopez-Molina, L., Conquet, F., Dubois-Dauphin, M. & Schibler, U. The Dbp gene is expressed according to a circadian rhythm in the suprachiasmatic nucleus and influences circadian behavior. EMBO J. 16, 6762–6771 (1997).
  Article CAS Google Scholar
• Ripperger, J.A., Shearman, L.P., Reppert, S.M. & Schibler, U. CLOCK, an essential pacemaker component, controls expression of the circadian transcription factor DBP. Genes Dev. 14, 679–689 (2000).
  CAS PubMed PubMed Central Google Scholar
• Bunger, M.K. et al. Mop3 is an essential component of the master circadian pacemaker in mammals. Cell 103, 1009–1017 (2000).
  Article CAS Google Scholar
• Lee, C., Etchegaray, J.P., Cagampang, F.R., Loudon, A.S. & Reppert, S.M. Posttranslational mechanisms regulate the mammalian circadian clock. Cell 107, 855–867 (2001).
  Article CAS Google Scholar
• Etchegaray, J.P., Lee, C., Wade, P.A. & Reppert, S.M. Rhythmic histone acetylation underlies transcription in the mammalian circadian clock. Nature 421, 177–182 (2003).
  Article CAS Google Scholar
• Schafmeier, T. et al. Transcriptional feedback of Neurospora circadian clock gene by phosphorylation-dependent inactivation of its transcription factor. Cell 122, 235–246 (2005).
  Article CAS Google Scholar
• Fischle, W., Wang, Y. & Allis, C.D. Histone and chromatin cross-talk. Curr. Opin. Cell Biol. 15, 172–183 (2003).
  Article CAS Google Scholar
• Margueron, R., Trojer, P. & Reinberg, D. The key to development: interpreting the histone code? Curr. Opin. Genet. Dev. 15, 163–176 (2005).
  Article CAS Google Scholar
• Ng, H.H., Robert, F., Young, R.A. & Struhl, K. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell 11, 709–719 (2003).
  Article CAS Google Scholar
• Liang, G. et al. Distinct localization of histone H3 acetylation and H3–K4 methylation to the transcription start sites in the human genome. Proc. Natl. Acad. Sci. USA 101, 7357–7362 (2004).
  Article CAS Google Scholar
• Bannister, A.J. et al. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410, 120–124 (2001).
  Article CAS Google Scholar
• Lachner, M., O'Carroll, D., Rea, S., Mechtler, K. & Jenuwein, T. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 410, 116–120 (2001).
  Article CAS Google Scholar
• Sarraf, S.A. & Stancheva, I. Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly. Mol. Cell 15, 595–605 (2004).
  Article CAS Google Scholar
• Balsalobre, A., Damiola, F. & Schibler, U. A serum shock induces circadian gene expression in mammalian tissue culture cells. Cell 93, 929–937 (1998).
  Article CAS Google Scholar
• Akashi, M. & Nishida, E. Involvement of the MAP kinase cascade in resetting of the mammalian circadian clock. Genes Dev. 14, 645–649 (2000).
  CAS PubMed PubMed Central Google Scholar
• Nagoshi, E. et al. Circadian gene expression in individual fibroblasts; cell-autonomous and self-sustained oscillators pass time to daughter cells. Cell 119, 693–705 (2004).
  Article CAS Google Scholar
• Wirth, D. & Hauser, H. Flp-mediated integration of expression cassettes into FRT-tagged chromosomal loci in mammalian cells. Methods Mol. Biol. 267, 467–476 (2004).
  CAS PubMed Google Scholar
• Yin, L. et al. Control of mouse hepatocyte proliferation and ploidy by p53 and p53ser246 mutation in vivo. Hepatology 27, 73–80 (1998).
  Article CAS Google Scholar
• Shi, Y. et al. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119, 941–953 (2004).
  Article CAS Google Scholar
• Lee, M.G., Wynder, C., Cooch, N. & Shiekhattar, R. An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation. Nature 437, 432–435 (2005).
  Article CAS Google Scholar
• Metzger, E. et al. LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription. Nature 437, 436–439 (2005).
  Article CAS Google Scholar
• Kimura, H. Histone dynamics in living cells revealed by photobleaching. DNA Repair (Amst.) 4, 939–950 (2005).
  Article CAS Google Scholar
• Kimura, H. & Cook, P.R. Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B. J. Cell Biol. 153, 1341–1353 (2001).
  Article CAS Google Scholar
• Zheng, B. et al. Nonredundant roles of the mPer1 and mPer2 genes in the mammalian circadian clock. Cell 105, 683–694 (2001).
  Article CAS Google Scholar
• Shang, Y., Hu, X., DiRenzo, J., Lazar, M.A. & Brown, M. Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription. Cell 103, 843–852 (2000).
  Article CAS Google Scholar
• Balsalobre, A. et al. Resetting of circadian time in peripheral tissues by glucocorticoid signaling. Science 289, 2344–2347 (2000).
  Article CAS Google Scholar