Systems biology of vaccination for seasonal influenza in humans (original) (raw)
Sasaki, S. et al. Comparison of the influenza virus-specific effector and memory B-cell responses to immunization of children and adults with live attenuated or inactivated influenza virus vaccines. J. Virol.81, 215–228 (2007). ArticleCAS Google Scholar
Fiore, A.E. et al. Prevention and control of influenza with vaccines: recommendations of the Advisory Committee on Immunization Practices (ACIP), 2010. MMWR Recomm. Rep.59, 1–62 (2010). PubMed Google Scholar
Sasaki, S. et al. Influence of prior influenza vaccination on antibody and B-cell responses. PLoS ONE3, e2975 (2008). Article Google Scholar
Zeman, A.M. et al. Humoral and cellular immune responses in children given annual immunization with trivalent inactivated influenza vaccine. Pediatr. Infect. Dis. J.26, 107–115 (2007). Article Google Scholar
Pulendran, B., Li, S. & Nakaya, H.I. Systems vaccinology. Immunity33, 516–529 (2010). ArticleCAS Google Scholar
Querec, T.D. et al. Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans. Nat. Immunol.10, 116–125 (2009). ArticleCAS Google Scholar
Gaucher, D. et al. Yellow fever vaccine induces integrated multilineage and polyfunctional immune responses. J. Exp. Med.205, 3119–3131 (2008). ArticleCAS Google Scholar
Pulendran, B. Learning immunology from the yellow fever vaccine: innate immunity to systems vaccinology. Nat. Rev. Immunol.9, 741–747 (2009). ArticleCAS Google Scholar
Querec, T. et al. Yellow fever vaccine YF-17D activates multiple dendritic cell subsets via TLR2, 7, 8, and 9 to stimulate polyvalent immunity. J. Exp. Med.203, 413–424 (2006). Article Google Scholar
Barrett, A.D. & Teuwen, D.E. Yellow fever vaccine–how does it work and why do rare cases of serious adverse events take place? Curr. Opin. Immunol.21, 308–313 (2009). ArticleCAS Google Scholar
Johnson, P.R. Jr. Feldman, S., Thompson, J.M., Mahoney, J.D. & Wright, P.F. Comparison of long-term systemic and secretory antibody responses in children given live, attenuated, or inactivated influenza A vaccine. J. Med. Virol.17, 325–335 (1985). Article Google Scholar
Beyer, W.E., Palache, A.M., de Jong, J.C. & Osterhaus, A.D. Cold-adapted live influenza vaccine versus inactivated vaccine: systemic vaccine reactions, local and systemic antibody response, and vaccine efficacy. A meta-analysis. Vaccine20, 1340–1353 (2002). ArticleCAS Google Scholar
US Department of Health and Human Services Food and Drug Administration Center for Biologics Evaluation and Research. Guidance for Industry: Clinical Data Needed to Support the Licensure of Pandemic Influenza Vaccines (Office of Communication, Training and Manufacturers Assistance, Rockville, Maryland, 2007).
Wrammert, J. et al. Rapid cloning of high-affinity human monoclonal antibodies against influenza virus. Nature453, 667–671 (2008). ArticleCAS Google Scholar
Takaoka, A. & Yanai, H. Interferon signalling network in innate defence. Cell. Microbiol.8, 907–922 (2006). ArticleCAS Google Scholar
Tusher, V.G., Tibshirani, R. & Chu, G. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA98, 5116–5121 (2001). ArticleCAS Google Scholar
Iwakoshi, N.N. et al. Plasma cell differentiation and the unfolded protein response intersect at the transcription factor XBP-1. Nat. Immunol.4, 321–329 (2003). ArticleCAS Google Scholar
Iwakoshi, N.N., Lee, A.H. & Glimcher, L.H. The X-box binding protein-1 transcription factor is required for plasma cell differentiation and the unfolded protein response. Immunol. Rev.194, 29–38 (2003). ArticleCAS Google Scholar
Ron, D. & Walter, P. Signal integration in the endoplasmic reticulum unfolded protein response. Nat. Rev. Mol. Cell Biol.8, 519–529 (2007). ArticleCAS Google Scholar
Ueda, Y. et al. Frequencies of dendritic cells (myeloid DC and plasmacytoid DC) and their ratio reduced in pregnant women: comparison with umbilical cord blood and normal healthy adults. Hum. Immunol.64, 1144–1151 (2003). Article Google Scholar
Shen-Orr, S.S. et al. Cell type-specific gene expression differences in complex tissues. Nat. Methods7, 287–289 (2010). ArticleCAS Google Scholar
Avery, D.T. et al. BAFF selectively enhances the survival of plasmablasts generated from human memory B cells. J. Clin. Invest.112, 286–297 (2003). ArticleCAS Google Scholar
Park, S.W. et al. The regulatory subunits of PI3K, p85alpha and p85beta, interact with XBP-1 and increase its nuclear translocation. Nat. Med.16, 429–437 (2010). ArticleCAS Google Scholar
Liu, B. & Li, Z. Endoplasmic reticulum HSP90b1 (gp96, grp94) optimizes B-cell function via chaperoning integrin and TLR but not immunoglobulin. Blood112, 1223–1230 (2008). ArticleCAS Google Scholar
Apostolou, A., Shen, Y., Liang, Y., Luo, J. & Fang, S. Armet, a UPR-upregulated protein, inhibits cell proliferation and ER stress-induced cell death. Exp. Cell Res.314, 2454–2467 (2008). ArticleCAS Google Scholar
Huleatt, J.W. et al. Potent immunogenicity and efficacy of a universal influenza vaccine candidate comprising a recombinant fusion protein linking influenza M2e to the TLR5 ligand flagellin. Vaccine26, 201–214 (2008). ArticleCAS Google Scholar
Treanor, J.J. et al. Safety and immunogenicity of a recombinant hemagglutinin influenza-flagellin fusion vaccine (VAX125) in healthy young adults. Vaccine28, 8268–8274 (2010). ArticleCAS Google Scholar
Talbot, H.K. et al. Immunopotentiation of trivalent influenza vaccine when given with VAX102, a recombinant influenza M2e vaccine fused to the TLR5 ligand flagellin. PLoS ONE5, e14442 (2010). Article Google Scholar
He, X.S. et al. Cellular immune responses in children and adults receiving inactivated or live attenuated influenza vaccines. J. Virol.80, 11756–11766 (2006). ArticleCAS Google Scholar
Le Bon, A. et al. Cutting edge: enhancement of antibody responses through direct stimulation of B and T cells by type I IFN. J. Immunol.176, 2074–2078 (2006). ArticleCAS Google Scholar
Lee, E.K. Large-scale optimization-based classification models in medicine and biology. Ann. Biomed. Eng.35, 1095–1109 (2007). Article Google Scholar
Brooks, J.P. & Lee, E.K. Analysis of the consistency of a mixed integer programming-based multi-category constrained discriminant model. Ann. Oper. Res.174, 147–168 (2010). Article Google Scholar
Sullivan, S.J., Jacobson, R. & Poland, G.A. Advances in the vaccination of the elderly against influenza: role of a high-dose vaccine. Expert Rev. Vaccines9, 1127–1133 (2010). ArticleCAS Google Scholar
Anderson, K.J. & Allen, R.L. Regulation of T-cell immunity by leucocyte immunoglobulin-like receptors: innate immune receptors for self on antigen-presenting cells. Immunology127, 8–17 (2009). ArticleCAS Google Scholar
Thomas, R., Matthias, T. & Witte, T. Leukocyte immunoglobulin-like receptors as new players in autoimmunity. Clin. Rev. Allergy Immunol.38, 159–162 (2010). ArticleCAS Google Scholar
Brown, D., Trowsdale, J. & Allen, R. The LILR family: modulators of innate and adaptive immune pathways in health and disease. Tissue Antigens64, 215–225 (2004). ArticleCAS Google Scholar
Krebs, J., Wilson, A. & Kisielow, P. Calmodulin-dependent protein kinase IV during T-cell development. Biochem. Biophys. Res. Commun.241, 383–389 (1997). ArticleCAS Google Scholar
Wang, S.L., Ribar, T.J. & Means, A.R. Expression of Ca2+/calmodulin-dependent protein kinase IV (caMKIV) messenger RNA during murine embryogenesis. Cell Growth Differ.12, 351–361 (2001). CASPubMed Google Scholar
Anderson, K.A. & Means, A.R. Defective signaling in a subpopulation of CD4+ T cells in the absence of Ca2+/calmodulin-dependent protein kinase IV. Mol. Cell. Biol.22, 23–29 (2002). ArticleCAS Google Scholar
Illario, M. et al. Calmodulin-dependent kinase IV links Toll-like receptor 4 signaling with survival pathway of activated dendritic cells. Blood111, 723–731 (2008). ArticleCAS Google Scholar
Sato, K. et al. Regulation of osteoclast differentiation and function by the CaMK-CREB pathway. Nat. Med.12, 1410–1416 (2006). ArticleCAS Google Scholar
Kitsos, C.M. et al. Calmodulin-dependent protein kinase IV regulates hematopoietic stem cell maintenance. J. Biol. Chem.280, 33101–33108 (2005). ArticleCAS Google Scholar
Pulendran, B. & Ahmed, R. Immunological mechanisms of vaccination. Nat. Immunol.131, 509–517 (2011). Article Google Scholar
Moldoveanu, Z., Clements, M.L., Prince, S.J., Murphy, B.R. & Mestecky, J. Human immune responses to influenza virus vaccines administered by systemic or mucosal routes. Vaccine13, 1006–1012 (1995). ArticleCAS Google Scholar
Shubinsky, G. & Schlesinger, M. The CD38 lymphocyte differentiation marker: new insight into its ectoenzymatic activity and its role as a signal transducer. Immunity7, 315–324 (1997). ArticleCAS Google Scholar
Deaglio, S., Mehta, K. & Malavasi, F. Human CD38: a (r)evolutionary story of enzymes and receptors. Leuk. Res.25, 1–12 (2001). ArticleCAS Google Scholar
Clements, M.L., Betts, R.F., Tierney, E.L. & Murphy, B.R. Serum and nasal wash antibodies associated with resistance to experimental challenge with influenza A wild-type virus. J. Clin. Microbiol.24, 157–160 (1986). CASPubMedPubMed Central Google Scholar
Potter, C.W. & Oxford, J.S. Determinants of immunity to influenza infection in man. Br. Med. Bull.35, 69–75 (1979). ArticleCAS Google Scholar
Hirota, Y. et al. Antibody efficacy as a keen index to evaluate influenza vaccine effectiveness. Vaccine15, 962–967 (1997). ArticleCAS Google Scholar
Belshe, R.B. Current status of live attenuated influenza virus vaccine in the US. Virus Res.103, 177–185 (2004). ArticleCAS Google Scholar
Chen, G.L., Lamirande, E.W., Jin, H., Kemble, G. & Subbarao, K. Safety, immunogencity, and efficacy of a cold-adapted A/Ann Arbor/6/60 (H2N2) vaccine in mice and ferrets. Virology398, 109–114 (2010). ArticleCAS Google Scholar
Crotty, S. et al. Cutting edge: long-term B cell memory in humans after smallpox vaccination. J. Immunol.171, 4969–4973 (2003). ArticleCAS Google Scholar
Wu, J.Y. et al. Spermiogenesis and exchange of basic nuclear proteins are impaired in male germ cells lacking Camk4. Nat. Genet.25, 448–452 (2000). ArticleCAS Google Scholar