Sequence census methods for functional genomics (original) (raw)
- Commentary
- Published: 19 December 2007
Nature Methods volume 5, pages 19–21 (2008)Cite this article
- 3874 Accesses
- 178 Citations
- 19 Altmetric
- Metrics details
Next-generation sequencing technologies are beginning to facilitate genome sequencing. But in addition, new applications and new assay concepts have emerged that are vastly increasing our ability to understand genome function.
This is a preview of subscription content, access via your institution
Relevant articles
Open Access articles citing this article.
Access options
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Additional access options:
Figure 1: Sequence census assays.
References
- Shendure, J. et al. Science 309, 1728–1732 (2005).
Article CAS Google Scholar - Velculescu, V.E., Zhang, L., Vogelstein, B. & Kinzler, K.W. Science 270, 484–487 (1995).
Article CAS Google Scholar - Brenner, S. et al. Nat. Biotechnol. 18, 630–634 (2000).
Article CAS Google Scholar - Margulies, M. et al. Nature 437, 376–380 (2005).
Article CAS Google Scholar - Barski, A. et al. Cell 129, 823–837 (2007).
Article CAS Google Scholar - Johnson, D.S., Mortazavi, A., Myers, R.M. & Wold, B. Science 316, 1497–1502 (2007).
Article CAS Google Scholar - Mikkelsen, T.S. et al. Nature 448, 553–560 (2007).
Article CAS Google Scholar - Robertson, G. et al. Nat. Methods 4, 651–657 (2007).
Article CAS Google Scholar - Lu, C. et al. Genome Res. 16, 1276–1288 (2006).
Article CAS Google Scholar - Ruby, J.G. et al. Cell 127, 1193–1207 (2006).
Article CAS Google Scholar
Author information
Authors and Affiliations
- Barbara Wold is in the Division of Biology, California Institute of Technology, Pasadena, California 91125, USA. bwold@caltech.edu,
Barbara Wold - Richard M. Myers is in the Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA. myers@shgc.stanford.edu,
Richard M Myers
Authors
- Barbara Wold
You can also search for this author inPubMed Google Scholar - Richard M Myers
You can also search for this author inPubMed Google Scholar
Rights and permissions
About this article
Cite this article
Wold, B., Myers, R. Sequence census methods for functional genomics.Nat Methods 5, 19–21 (2008). https://doi.org/10.1038/nmeth1157
- Published: 19 December 2007
- Issue Date: January 2008
- DOI: https://doi.org/10.1038/nmeth1157
This article is cited by
Next-Generation Sequencing Data Analysis on Pool-Seq and Low-Coverage Retinoblastoma Data
- Gülistan Özdemir Özdoğan
- Hilal Kaya
Interdisciplinary Sciences: Computational Life Sciences (2020)
High-throughput determination of RNA structures
- Eric J. Strobel
- Angela M Yu
- Julius B. Lucks
Nature Reviews Genetics (2018)
Trypanosoma cruzi specific mRNA amplification by in vitro transcription improves parasite transcriptomics in host-parasite RNA mixtures
- Rafael Luis Kessler
- Daniela Parada Pavoni
- Christian Macagnan Probst
BMC Genomics (2017)
Near-optimal probabilistic RNA-seq quantification
- Nicolas L Bray
- Harold Pimentel
- Lior Pachter
Nature Biotechnology (2016)