Photo-leucine and photo-methionine allow identification of protein-protein interactions in living cells (original) (raw)

• Ho, Y. et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180–183 (2002).
  Article CAS Google Scholar
• Gavin, A.C. et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141–147 (2002).
  Article CAS Google Scholar
• Gadek, T.R. Strategies and methods in the identification of antagonists of protein-protein interactions. Biotechniques (Suppl.) 34, 21–24 (2003).
  Article Google Scholar
• Ji, T.H. Bifunctional reagents. Methods Enzymol. 91, 580–609 (1983).
  Article CAS Google Scholar
• Bayley, H. & Knowles, J.R. Photoaffinity labeling. Methods Enzymol. 46, 69–114 (1977).
  Article CAS Google Scholar
• Jacobs, S., Hazum, E., Shechter, Y. & Cuatrecasas, P. Insulin receptor: covalent labeling and identification of subunits. Proc. Natl. Acad. Sci. USA 76, 4918–4921 (1979).
  Article CAS Google Scholar
• Thiele, C. & Fahrenholz, F. Photoaffinity labeling of central cholecystokinin receptors with high efficiency. Biochemistry 32, 2741–2746 (1993).
  Article CAS Google Scholar
• Kurzchalia, T.V. et al. The signal sequence of nascent preprolactin interacts with the 54K polypeptide of the signal recognition particle. Nature 320, 634–636 (1986).
  Article CAS Google Scholar
• Krieg, U.C., Walter, P. & Johnson, A.E. Photocrosslinking of the signal sequence of nascent preprolactin to the 54-kilodalton polypeptide of the signal recognition particle. Proc. Natl. Acad. Sci. USA 83, 8604–8608 (1986).
  Article CAS Google Scholar
• Cornish, V.W. et al. Site-specific incorporation of biophysical probes into proteins. Proc. Natl. Acad. Sci. USA 91, 2910–2915 (1994).
  Article CAS Google Scholar
• Chin, J.W., Martin, A.B., King, D.S., Wang, L. & Schultz, P.G. Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli. Proc. Natl. Acad. Sci. USA 99, 11020–11024 (2002).
  Article CAS Google Scholar
• Deiters, A. et al. Adding amino acids with novel reactivity to the genetic code of Saccharomyces cerevisiae. J. Am. Chem. Soc. 125, 11782–11783 (2003).
  Article CAS Google Scholar
• Sakamoto, K. et al. Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells. Nucleic Acids Res. 30, 4692–4699 (2002).
  Article CAS Google Scholar
• Monahan, S.L., Lester, H.A. & Dougherty, D.A. Site-specific incorporation of unnatural amino acids into receptors expressed in mammalian cells. Chem. Biol. 10, 573–580 (2003).
  Article CAS Google Scholar
• Zhang, Z. et al. Selective incorporation of 5-hydroxytryptophan into proteins in mammalian cells. Proc. Natl. Acad. Sci. USA 101, 8882–8887 (2004).
  Article CAS Google Scholar
• Harrp, D.N., Bao, L.Q., Black, C.J., Gleason, J.G. & Smith, R.A. An efficient α-halogenation of acyl chlorides by _N_-bromosuccinimide, _N_-chlorosuccinimide, and molecular iodine. J. Org. Chem. 40, 3420–3427 (1975).
  Article Google Scholar
• Strecker, A. Ueber die kuenstliche Bildung der Milchsaeure und eines neuen, dem Glycocoll homologen Koerper. Liebigs Ann. Chem. 75, 27–45 (1850).
  Article Google Scholar
• Moore, S. & Stein, W.H. Chromatography of amino acids on sulfonated polystyrene resins. J. Biol. Chem. 192, 663–681 (1951).
  CAS PubMed Google Scholar
• Stenmark, H. et al. Inhibition of rab5 GTPase activity stimulates membrane fusion in endocytosis. EMBO J. 13, 1287–1296 (1994).
  Article CAS Google Scholar
• Sargiacomo, M. et al. Oligomeric structure of caveolin: implications for caveolae membrane organization. Proc. Natl. Acad. Sci. USA 92, 9407–9411 (1995).
  Article CAS Google Scholar
• Thibonnier, M. The human platelet vasopressin receptor identification by direct ultraviolet photoaffinity labeling. J. Biol. Chem. 262, 10960–10964 (1987).
  CAS PubMed Google Scholar
• Snyers, L., Umlauf, E. & Prohaska, R. Oligomeric nature of the integral membrane protein stomatin. J. Biol. Chem. 273, 17221–17226 (1998).
  Article CAS Google Scholar
• Simonsen, A. et al. EEA1 links PI(3)K function to Rab5 regulation of endosome fusion. Nature 394, 494–498 (1998).
  Article CAS Google Scholar
• Falkenstein, E., Meyer, C., Eisen, C., Scriba, P.C. & Wehling, M. Full-length cDNA sequence of a progesterone membrane-binding protein from porcine vascular smooth muscle cells. Biochem. Biophys. Res. Commun. 229, 86–89 (1996).
  Article CAS Google Scholar
• Kanai, Y. et al. Expression cloning and characterization of a transporter for large neutral amino acids activated by the heavy chain of 4F2 antigen (CD98). J. Biol. Chem. 273, 23629–23632 (1998).
  Article CAS Google Scholar
• Ferrell, K., Wilkinson, C.R., Dubiel, W. & Gordon, C. Regulatory subunit interactions of the 26S proteasome, a complex problem. Trends Biochem. Sci. 25, 83–88 (2000).
  Article CAS Google Scholar
• Fu, H., Reis, N., Lee, Y., Glickman, M.H. & Vierstra, R.D. Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome. EMBO J. 20, 7096–7107 (2001).
  Article CAS Google Scholar
• Brown, M.S. & Goldstein, J.L. A proteolytic pathway that controls the cholesterol content of membranes, cells, and blood. Proc. Natl. Acad. Sci. USA 96, 11041–11048 (1999).
  Article CAS Google Scholar
• Yang, T. et al. Crucial step in cholesterol homeostasis: sterols promote binding of SCAP to INSIG-1, a membrane protein that facilitates retention of SREBPs in ER. Cell 110, 489–500 (2002).
  Article CAS Google Scholar
• Horton, J.D., Goldstein, J.L. & Brown, M.S. SREBPs: transcriptional mediators of lipid homeostasis. Cold Spring Harb. Symp. Quant. Biol. 67, 491–498 (2002).
  Article CAS Google Scholar
• Adams, C.M. et al. Cholesterol and 25-hydroxycholesterol inhibit activation of SREBPs by different mechanisms, both involving SCAP and insigs. J. Biol. Chem. 279, 52772–52780 (2004).
  Article CAS Google Scholar
• Nolte, I., Jeckel, D., Wieland, F.T. & Sohn, K. Localization and topology of ratp28, a member of a novel family of putative steroid-binding proteins. Biochim. Biophys. Acta 1543, 123–130 (2000).
  Article CAS Google Scholar
• Hendrickson, T.L., de Crecy-Lagard, V. & Schimmel, P. Incorporation of nonnatural amino acids into proteins. Annu. Rev. Biochem. 73, 147–176 (2004).
  Article CAS Google Scholar
• Kiick, K.L., Weberskirch, R. & Tirrell, D.A. Identification of an expanded set of translationally active methionine analogues in Escherichia coli. FEBS Lett. 502, 25–30 (2001).
  Article CAS Google Scholar
• Link, A.J., Mock, M.L. & Tirrell, D.A. Non-canonical amino acids in protein engineering. Curr. Opin. Biotechnol. 14, 603–609 (2003).
  Article CAS Google Scholar
• Rennert, O.M. & Anker, H.S. On the incorporation of 5′,5′,5′-trifluoroleucine into proteins of E. coli. Biochemistry 13, 471–476 (1963).
  Article Google Scholar
• Doring, V. et al. Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway. Science 292, 501–504 (2001).
  Article CAS Google Scholar
• Mursinna, R.S. & Martinis, S.A. Rational design to block amino acid editing of a tRNA synthetase. J. Am. Chem. Soc. 124, 7286–7287 (2002).
  Article CAS Google Scholar
• Tang, Y. & Tirrell, D.A. Attenuation of the editing activity of the Escherichia coli leucyl-tRNA synthetase allows incorporation of novel amino acids into proteins in vivo. Biochemistry 41, 10635–10645 (2002).
  Article CAS Google Scholar
• Jones, S. & Thornton, J.M. Principles of protein-protein interactions. Proc. Natl. Acad. Sci. USA 93, 13–20 (1996).
  Article CAS Google Scholar
• Dupree, P., Parton, R.G., Raposo, G., Kurzchalia, T.V. & Simons, K. Caveolae and sorting in the _trans_-Golgi network of epithelial cells. EMBO J. 12, 1597–1605 (1993).
  Article CAS Google Scholar
• Thiele, C., Hannah, M.J., Fahrenholz, F. & Huttner, W.B. Cholesterol binds to synaptophysin and is required for biogenesis of synaptic vesicles. Nat. Cell Biol. 2, 42–49 (2000).
  Article CAS Google Scholar
• Wessel, D. & Fluegge, U.I. A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal. Biochem. 138, 141–143 (1984).
  Article CAS Google Scholar
• Udenfriend, S. et al. Fluorescamine: a reagent for assay of amino acids, peptides, proteins, and primary amines in the picomole range. Science 178, 871–872 (1972).
  Article CAS Google Scholar
• Tourasse, N.J. & Li, W.H. Selective constraints, amino acid composition, and the rate of protein evolution. Mol. Biol. Evol. 17, 656–664 (2000).
  Article CAS Google Scholar