Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus (original) (raw)
References
McConnell, M., Reznick, A. & Wright, A. Studies on the initial interactions of bacteriophage epsilon15 with its host cell, Salmonella anatum. Virology94, 10–23 (1979) ArticleCAS Google Scholar
Jiang, W. et al. Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions. Nature Struct. Biol.10, 131–135 (2003) ArticleCAS Google Scholar
Wikoff, W. R. et al. Topologically linked protein rings in the bacteriophage HK97 capsid. Science289, 2129–2133 (2000) ArticleADSCAS Google Scholar
Fokine, A. et al. Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry. Proc. Natl Acad. Sci. USA102, 7163–7168 (2005) ArticleADSCAS Google Scholar
Morais, M. C. et al. Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29. Mol. Cell18, 149–159 (2005) ArticleCAS Google Scholar
Baker, M. L., Jiang, W., Rixon, F. J. & Chiu, W. Common ancestry of herpesviruses and tailed DNA bacteriophages. J. Virol.79, 14967–14970 (2005) ArticleCAS Google Scholar
Breitbart, M., Rohwer, F. & Abedon, S. T. in Phages: their Role in Bacterial Pathogenesis and Biotechnology (eds Waldor, M. K., Friedman, D. I. & Adhya, S. L.) 66–91 (ASM Press, Washington DC, 2005) Book Google Scholar
Bazinet, C. & King, J. The DNA translocating vertex of dsDNA bacteriophage. Annu. Rev. Microbiol.39, 109–129 (1985) ArticleCAS Google Scholar
Smith, D. E. et al. The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature413, 748–752 (2001) ArticleADSCAS Google Scholar
Earnshaw, W. C., King, J., Harrison, S. C. & Eiserling, F. A. The structural organization of DNA packaged within the heads of T4 wild-type, isometric and giant bacteriophages. Cell14, 559–568 (1978) ArticleCAS Google Scholar
Arsuaga, J., Tan, R. K., Vazquez, M., Sumners de, W. & Harvey, S. C. Investigation of viral DNA packaging using molecular mechanics models. Biophys. Chem.101–102, 475–484 (2002) Article Google Scholar
Zhang, Z. et al. Visualization of the maturation transition in bacteriophage P22 by electron cryomicroscopy. J. Mol. Biol.297, 615–626 (2000) ArticleCAS Google Scholar
Cerritelli, M. E. et al. Encapsidated conformation of bacteriophage T7 DNA. Cell91, 271–280 (1997) ArticleCAS Google Scholar
Lurz, R. et al. Structural organisation of the head-to-tail interface of a bacterial virus. J. Mol. Biol.310, 1027–1037 (2001) ArticleCAS Google Scholar
Carazo, J. M., Fujisawa, H., Nakasu, S. & Carrascosa, J. L. Bacteriophage T3 gene 8 product oligomer structure. J. Ultrastruct. Mol. Struct. Res.94, 105–113 (1986) ArticleCAS Google Scholar
Simpson, A. A. et al. Structure of the bacteriophage phi29 DNA packaging motor. Nature408, 745–750 (2000) ArticleADSCAS Google Scholar
Orlova, E. V. et al. Structure of a viral DNA gatekeeper at 10 Å resolution by cryo-electron microscopy. EMBO J.22, 1255–1262 (2003) ArticleCAS Google Scholar
Agirrezabala, X. et al. Structure of the connector of bacteriophage T7 at 8 Å resolution: structural homologies of a basic component of a DNA translocating machinery. J. Mol. Biol.347, 895–902 (2005) ArticleCAS Google Scholar
Tang, L., Marion, W. R., Cingolani, G., Prevelige, P. E. & Johnson, J. E. Three-dimensional structure of the bacteriophage P22 tail machine. EMBO J.24, 2087–2095 (2005) ArticleCAS Google Scholar
Cerritelli, M. E. et al. A second symmetry mismatch at the portal vertex of bacteriophage T7: 8-fold symmetry in the procapsid core. J. Mol. Biol.327, 1–6 (2003) ArticleCAS Google Scholar
Molineux, I. J. No syringes please, ejection of phage T7 DNA from the virion is enzyme driven. Mol. Microbiol.40, 1–8 (2001) ArticleCAS Google Scholar
Tavares, P., Lurz, R., Stiege, A., Ruckert, B. & Trautner, T. A. Sequential headful packaging and fate of the cleaved DNA ends in bacteriophage SPP1. J. Mol. Biol.264, 954–967 (1996) ArticleCAS Google Scholar
Dubochet, J. et al. Cryo-electron microscopy of vitrified specimens. Q. Rev. Biophys.21, 129–228 (1988) ArticleCAS Google Scholar
Booth, C. R. et al. A 9 Å single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope. J. Struct. Biol.147, 116–127 (2004) Article Google Scholar
Jiang, W. et al. Semi-automated icosahedral particle reconstruction at sub-nanometer resolution. J. Struct. Biol.136, 214–225 (2001) ArticleCAS Google Scholar
Ludtke, S. J., Baldwin, P. R. & Chiu, W. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol.128, 82–97 (1999) ArticleCAS Google Scholar
Jiang, W., Baker, M. L., Ludtke, S. J. & Chiu, W. Bridging the information gap: computational tools for intermediate resolution structure interpretation. J. Mol. Biol.308, 1033–1044 (2001) ArticleCAS Google Scholar
Pettersen, E. F. et al. UCSF Chimera—a visualization system for exploratory research and analysis. J. Comput. Chem.25, 1605–1612 (2004) ArticleCAS Google Scholar