Kellis, M., Patterson, N., Endrizzi, M., Birren, B. & Lander, E. S. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature423, 241–254 (2003) ArticleADSCAS Google Scholar
Ghaemmaghami, S. et al. Global analysis of protein expression in yeast. Nature425, 737–741 (2003) ArticleADSCAS Google Scholar
Wei, J. et al. Global proteome discovery using an online three-dimensional LC–MS/MS. J. Proteome Res.4, 801–808 (2005) ArticleCAS Google Scholar
Futcher, B., Latter, G. I., Monardo, P., McLaughlin, C. S. & Garrels, J. I. A sampling of the yeast proteome. Mol. Cell. Biol.19, 7357–7368 (1999) ArticleCAS Google Scholar
Gygi, S. P., Rochon, Y., Franza, B. R. & Aebersold, R. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol.19, 1720–1730 (1999) ArticleCAS Google Scholar
Washburn, M. P. et al. Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA100, 3107–3112 (2003) ArticleADSCAS Google Scholar
Schrödinger, E. What is Life? The Physical Aspect of the Living Cell (Cambridge Univ. Press, Cambridge, UK, 1944) MATH Google Scholar
Barkai, N. & Leibler, S. Circadian clocks limited by noise. Nature403, 267–268 (2000) ArticleADSCAS Google Scholar
Balaban, N. Q., Merrin, J., Chait, R., Kowalik, L. & Leibler, S. Bacterial persistence as a phenotypic switch. Science305, 1622–1625 (2004) ArticleADSCAS Google Scholar
Samoilov, M., Plyasunov, S. & Arkin, A. P. Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations. Proc. Natl Acad. Sci. USA102, 2310–2315 (2005) ArticleADSCAS Google Scholar
Raser, J. M. & O'Shea, E. K. Noise in gene expression: origins, consequences, and control. Science309, 2010–2013 (2005) ArticleADSCAS Google Scholar
Novick, A. & Weiner, M. Enzyme induction as an all-or-none phenomenon. Proc. Natl Acad. Sci. USA43, 553–566 (1957) ArticleADSCAS Google Scholar
Ferrell, J. E. Jr & Machleder, E. M. The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. Science280, 895–898 (1998) ArticleADSCAS Google Scholar
Biggar, S. R. & Crabtree, G. R. Cell signaling can direct either binary or graded transcriptional responses. EMBO J.20, 3167–3176 (2001) ArticleCAS Google Scholar
Lahav, G. et al. Dynamics of the p53–Mdm2 feedback loop in individual cells. Nature Genet.36, 147–150 (2004) ArticleCAS Google Scholar
Eitzman, P. D., Hendrick, J. L. & Srienc, F. Quantitative immunofluorescence in single Saccharomyces cerevisiae cells. Cytometry10, 475–483 (1989) ArticleCAS Google Scholar
Edwards, B. S., Kuckuck, F. & Sklar, L. A. Plug flow cytometry: an automated coupling device for rapid sequential flow cytometric sample analysis. Cytometry37, 156–159 (1999) ArticleCAS Google Scholar
Becskei, A., Kaufmann, B. B. & van Oudenaarden, A. Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nature Genet.37, 937–944 (2005) ArticleCAS Google Scholar
Blake, W. J., Kaern, M., Cantor, C. R. & Collins, J. J. Noise in eukaryotic gene expression. Nature422, 633–637 (2003) ArticleADSCAS Google Scholar
Elowitz, M. B., Levine, A. J., Siggia, E. D. & Swain, P. S. Stochastic gene expression in a single cell. Science297, 1183–1186 (2002) ArticleADSCAS Google Scholar
Ozbudak, E. M., Thattai, M., Kurtser, I., Grossman, A. D. & van Oudenaarden, A. Regulation of noise in the expression of a single gene. Nature Genet.31, 69–73 (2002) ArticleCAS Google Scholar
Paulsson, J. Prime movers of noisy gene expression. Nature Genet.37, 925–926 (2005) ArticleCAS Google Scholar
Zaslaver, A. et al. Just-in-time transcription program in metabolic pathways. Nature Genet.36, 486–491 (2004) ArticleCAS Google Scholar
Cormack, B. P., Valdivia, R. H. & Falkow, S. FACS-optimized mutants of the green fluorescent protein (GFP). Gene173, 33–38 (1996) ArticleCAS Google Scholar
Shaner, N. C. et al. Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnol.22, 1567–1572 (2004) ArticleCAS Google Scholar
Wu, J. Q. & Pollard, T. D. Counting cytokinesis proteins globally and locally in fission yeast. Science310, 310–314 (2005) ArticleADSCAS Google Scholar
Hershko, A. & Ciechanover, A. The ubiquitin system. Annu. Rev. Biochem.67, 425–479 (1998) ArticleCAS Google Scholar
Wodicka, L., Dong, H., Mittmann, M., Ho, M. H. & Lockhart, D. J. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nature Biotechnol.15, 1359–1367 (1997) ArticleCAS Google Scholar
Felice, M. R. et al. Post-transcriptional regulation of the yeast high affinity iron transport system. J. Biol. Chem.280, 22181–22190 (2005) ArticleCAS Google Scholar
Colman-Lerner, A. et al. Regulated cell-to-cell variation in a cell-fate decision system. Nature437, 699–706 (2005) ArticleADSCAS Google Scholar
Raser, J. M. & O'Shea, E. K. Control of stochasticity in eukaryotic gene expression. Science304, 1811–1814 (2004) ArticleADSCAS Google Scholar
Fraser, H. B., Hirsh, A. E., Giaever, G., Kumm, J. & Eisen, M. B. Noise minimization in eukaryotic gene expression. PLoS Biol.2, e137 (2004) Article Google Scholar
Ashburner, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genet.25, 25–29 (2000) ArticleCAS Google Scholar
Harbison, C. T. et al. Transcriptional regulatory code of a eukaryotic genome. Nature431, 99–104 (2004) ArticleADSCAS Google Scholar
Yu, L. & Morse, R. H. Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae. Mol. Cell. Biol.19, 5279–5288 (1999) ArticleCAS Google Scholar
Huisinga, K. L. & Pugh, B. F. A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol. Cell13, 573–585 (2004) ArticleCAS Google Scholar
Fagarasanu, M., Fagarasanu, A., Tam, Y. Y., Aitchison, J. D. & Rachubinski, R. A. Inp1p is a peroxisomal membrane protein required for peroxisome inheritance in Saccharomyces cerevisiae. J. Cell Biol.169, 765–775 (2005) ArticleCAS Google Scholar
Holstege, F. C. et al. Dissecting the regulatory circuitry of a eukaryotic genome. Cell95, 717–728 (1998) ArticleCAS Google Scholar
Wang, Y. et al. Precision and functional specificity in mRNA decay. Proc. Natl Acad. Sci. USA99, 5860–5865 (2002) ArticleADSCAS Google Scholar