Genetic evidence for complex speciation of humans and chimpanzees (original) (raw)
Zuckerkandl, E. & Pauling, L. Molecules as documents of evolutionary history. J. Theor. Biol.8, 357–366 (1965) ArticleCASPubMed Google Scholar
Glazko, G. V. & Nei, M. Estimation of divergence times for major lineages of primate species. Mol. Biol. Evol.20, 424–434 (2003) ArticleCASPubMed Google Scholar
Pamilo, P. & Nei, M. Relationships between gene trees and species trees. Mol. Biol. Evol.5, 568–583 (1988) CASPubMed Google Scholar
Ruvolo, M. Molecular phylogeny of the hominoids: inferences from multiple independent DNA sequence data sets. Mol. Biol. Evol.14, 248–265 (1997) ArticleCASPubMed Google Scholar
Chen, F. C. & Li, W. H. Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet.68, 444–456 (2001) ArticleCASPubMedPubMed Central Google Scholar
Takahata, N. & Satta, Y. Evolution of the primate lineage leading to modern humans: phylogenetic and demographic inferences from DNA sequences. Proc. Natl Acad. Sci. USA94, 4811–4815 (1997) ArticleADSCASPubMedPubMed Central Google Scholar
Rannala, B. & Yang, Z. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics164, 1645–1656 (2003) CASPubMedPubMed Central Google Scholar
O'hUigin, C., Satta, Y., Takahata, N. & Klein, J. Contribution of homoplasy and of ancestral polymorphism to the evolution of genes in anthropoid primates. Mol. Biol. Evol.19, 1501–1513 (2002) ArticleCASPubMed Google Scholar
Pilbeam, D. & Young, N. Hominoid evolution: synthesizing disparate data. C. R. Palevol.3, 305–321 (2004) Article Google Scholar
Mikkelsen, T. S. et al. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature437, 69–87 (2005) ArticleCAS Google Scholar
Hwang, D. G. & Green, P. Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution. Proc. Natl Acad. Sci. USA101, 13994–14001 (2004) ArticleADSCASPubMedPubMed Central Google Scholar
Rat Genome Sequencing Project Consortium, Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature428, 493–521 (2004) Article Google Scholar
Taylor, J., Tyekucheva, S., Zody, M., Chiaromonte, F. & Makova, K. D. Strong and weak male mutation bias at different sites in the primate genomes: Insights from the human–chimpanzee comparison. Mol. Biol. Evol.23, 565–573 (2006) ArticleCASPubMed Google Scholar
Makova, K. D. & Li, W. H. Strong male-driven evolution of DNA sequences in humans and apes. Nature416, 624–626 (2002) ArticleADSCASPubMed Google Scholar
Vignaud, P. et al. Geology and palaeontology of the Upper Miocene Toros-Menalla hominid locality, Chad. Nature418, 152–155 (2002) ArticleADSCASPubMed Google Scholar
Brunet, M. et al. New material of the earliest hominid from the Upper Miocene of Chad. Nature434, 752–755 (2005) ArticleADSCASPubMed Google Scholar
MacLatchy, L., Gebo, D., Kityo, R. & Pilbeam, D. Postcranial functional morphology of Morotopithecus bishopi, with implications for the evolution of modern ape locomotion. J. Hum. Evol.38, 1–25 (2000) Article Google Scholar
Senut, B. et al. First hominid from the Miocene (Lukeino Formation, Kenya). C. R. Acad. Sci. IIA332, 137–144 (2001) Google Scholar
WoldeGabriel, G. et al. Geology and palaeontology of the Late Miocene Middle Awash valley, Afar rift, Ethiopia. Nature412, 175–178 (2001) ArticleADSCASPubMed Google Scholar
Sarich, V. M. in New Interpretations of Ape and Human Ancestry (eds Ciochon, R. L. & Corruccini, R. S.) 137–150 (Plenum, New York, 1983) Google Scholar
Coyne, J. A. & Orr, H. A. in Speciation and its Consequences (eds Otte, D. & Endler, J. A.) 180–207 (Sinauer, Sunderland, Massachusetts, 1989) Google Scholar
Tao, Y., Chen, S., Hartl, D. L. & Laurie, C. C. Genetic dissection of hybrid incompatibilities between Drosophila simulans and D. mauritiana. I. Differential accumulation of hybrid male sterility effects on the X and autosomes. Genetics164, 1383–1397 (2003) CASPubMedPubMed Central Google Scholar
True, J. R., Weir, B. S. & Laurie, C. C. A genome-wide survey of hybrid incompatibility factors by the introgression of marked segments of Drosophila mauritiana chromosomes into Drosophila simulans. Genetics142, 819–837 (1996) CASPubMedPubMed Central Google Scholar
Orr, H. A. & Irving, S. Segregation distortion in hybrids between the Bogota and USA subspecies of Drosophila pseudoobscura. Genetics169, 671–682 (2005) ArticlePubMedPubMed Central Google Scholar
Haldane, J. B. S. Sex ratio and unidirectional sterility in hybrid animals. J. Genet.58, 237–242 (1922) Article Google Scholar
Tucker, P. K., Sage, R. D., Wilson, A. C. & Eichler, E. M. Abrupt cline for sex chromosomes in a hybrid zone between two species of mice. Evolution Int. J. Org. Evolution46, 1146–1163 (1992) Article Google Scholar
Mayr, E. Systematics and the Origin of Species (Columbia Univ. Press, New York, 1942) Google Scholar
Coyne, J. A. & Orr, H. A. Speciation (Sinauer, Sunderland, Massachusetts, 2004) Google Scholar
Rieseberg, L. H. Hybrid origin of plant species. Annu. Rev. Ecol. Syst.28, 359–389 (1997) Article Google Scholar
Boag, P. T. & Grant, P. R. The classical case of character release: Darwin's finches (Geospiza) on Isla Daphne Major, Galápagos. Biol. J. Linn. Soc.22, 243–287 (1984) Article Google Scholar
Schwarz, D., Matta, B. M., Shakir-Botteri, N. L. & McPheron, B. A. Host shift to an invasive plant triggers rapid animal hybrid speciation. Nature436, 546–549 (2005) ArticleADSCASPubMed Google Scholar
Huang, X. On global sequence alignment. Comput. Appl. Biosci.10, 227–235 (1994) CASPubMed Google Scholar
Cheng, Z. et al. A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature437, 88–93 (2005) ArticleADSCASPubMed Google Scholar
Steiper, M. E., Young, N. M. & Sukarna, T. Y. Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence. Proc. Natl Acad. Sci. USA101, 17021–17026 (2004) ArticleADSCASPubMedPubMed Central Google Scholar