The Beaker phenomenon and the genomic transformation of northwest Europe (original) (raw)

Accession codes

Primary accessions

European Nucleotide Archive

Change history

Please see accompanying Erratum (https://doi.org/10.1038/nature26164). The surname of author Alessandra Modi was incorrectly listed as ‘Mod’. The original Article has been corrected online.

References

  1. Czebreszuk, J. In Ancient Europe, 8000 b.c. to a.d_. 1000: An Encyclopedia of the Barbarian World_ (eds Bogucki, P. I. & Crabtree, P. J. ) 476–485 (Charles Scribner’s Sons, 2004)
  2. Haak, W. et al. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature 522, 207–211 (2015)
    Article ADS CAS PubMed PubMed Central Google Scholar
  3. Allentoft, M. E. et al. Population genomics of Bronze Age Eurasia. Nature 522, 167–172 (2015)
    Article ADS CAS PubMed Google Scholar
  4. Mathieson, I. et al. Genome-wide patterns of selection in 230 ancient Eurasians. Nature 528, 499–503 (2015)
    Article ADS CAS PubMed PubMed Central Google Scholar
  5. Czebreszuk, J. Similar But Different. Bell Beakers in Europe (Adam Mickiewicz Univ., 2004)
  6. Cardoso, J. L. Absolute chronology of the Beaker phenomenon north of the Tagus estuary: demographic and social implications. Trab. Prehist. 71, 56–75 (2014)
    Article Google Scholar
  7. Jeunesse, C. The dogma of the Iberian origin of the Bell Beaker: attempting its deconstruction. J. Neolit. Archaeol. 16, 158–166 (2015)
    Google Scholar
  8. Fokkens, H. & Nicolis, F. Background to Beakers. Inquiries into Regional Cultural Backgrounds of the Bell Beaker Complex (Sidestone, 2012)
  9. Linden, M. V. What linked the Bell Beakers in third millennium bc Europe? Antiquity 81, 343–352 (2007)
    Article Google Scholar
  10. Fu, Q. et al. An early modern human from Romania with a recent Neanderthal ancestor. Nature 524, 216–219 (2015)
    Article ADS CAS PubMed PubMed Central Google Scholar
  11. Lazaridis, I. et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature 513, 409–413 (2014)
    Article ADS CAS PubMed PubMed Central Google Scholar
  12. Lazaridis, I. et al. Genomic insights into the origin of farming in the ancient Near East. Nature 536, 419–424 (2016)
    Article ADS CAS PubMed PubMed Central Google Scholar
  13. Mallick, S. et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature 538, 201–206 (2016)
    Article ADS CAS PubMed PubMed Central Google Scholar
  14. Valverde, L. et al. New clues to the evolutionary history of the main European paternal lineage M269: dissection of the Y-SNP S116 in Atlantic Europe and Iberia. Eur. J. Hum. Genet. 24, 437–441 (2016)
    Article PubMed Google Scholar
  15. Gamba, C. et al. Ancient DNA from an Early Neolithic Iberian population supports a pioneer colonization by first farmers. Mol. Ecol. 21, 45–56 (2012)
    Article CAS PubMed Google Scholar
  16. Günther, T. et al. Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques. Proc. Natl Acad. Sci. USA 112, 11917–11922 (2015)
    Article ADS CAS PubMed PubMed Central Google Scholar
  17. Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655–1664 (2009)
    Article CAS PubMed PubMed Central Google Scholar
  18. Broushaki, F. et al. Early Neolithic genomes from the eastern Fertile Crescent. Science 353, 499–503 (2016)
    Article ADS CAS PubMed PubMed Central Google Scholar
  19. Skoglund, P. et al. Genomic diversity and admixture differs for Stone-Age Scandinavian foragers and farmers. Science 344, 747–750 (2014)
    Article ADS CAS PubMed Google Scholar
  20. Olalde, I. et al. A common genetic origin for early farmers from Mediterranean Cardial and central European LBK cultures. Mol. Biol. Evol. 32, 3132–3142 (2015)
    CAS PubMed PubMed Central Google Scholar
  21. Mathieson, I. et al. The genomic history of southeastern Europe. Nature https://doi.org/10.1038/nature25778 (2018)
  22. Lipson, M. et al. Parallel palaeogenomic transects reveal complex genetic history of early European farmers. Nature 551, 368–372 (2017)
    Article ADS CAS PubMed PubMed Central Google Scholar
  23. Cassidy, L. M. et al. Neolithic and Bronze Age migration to Ireland and establishment of the insular Atlantic genome. Proc. Natl Acad. Sci. USA 113, 368–373 (2016)
    Article ADS CAS PubMed Google Scholar
  24. Sheridan, J. A. In Landscapes in Transition (eds Finlayson, B. & Warren, G. ) 89–105 (Oxbow, 2010)
  25. Burger, J., Kirchner, M., Bramanti, B., Haak, W. & Thomas, M. G. Absence of the lactase-persistence-associated allele in early Neolithic Europeans. Proc. Natl Acad. Sci. USA 104, 3736–3741 (2007)
    Article ADS CAS PubMed PubMed Central Google Scholar
  26. Clarke, D. L. In Glockenbecher Symposion, Oberried, _18_–23 März 1974 (eds Lanting, J. N. & van DerWaals, J. D. ) 460–477 (Bussum, 1976)
  27. Clark, G. The invasion hypothesis in British archaeology. Antiquity 40, 172–189 (1966)
    Article Google Scholar
  28. Brotherton, P. et al. Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nat. Commun. 4, 1764 (2013)
    Article CAS PubMed Google Scholar
  29. Desideri, J. When Beakers Met Bell Beakers: an Analysis of Dental Remains (British Archaeological Reports International Series 2292) (Archaeopress, 2011)
  30. Parker Pearson, M. et al. Beaker people in Britain: migration, mobility and diet. Antiquity 90, 620–637 (2016)
    Article Google Scholar
  31. Shennan, S. et al. Regional population collapse followed initial agriculture booms in mid-Holocene Europe. Nat. Commun. 4, 2486 (2013)
    Article ADS CAS PubMed Google Scholar
  32. Valtueña, A. A. et al. The Stone Age plague and its persistence in Eurasia. Curr. Biol. 27, 3683–3691 (2017)
    Article CAS Google Scholar
  33. Rasmussen, S. et al. Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago. Cell 163, 571–582 (2015)
    Article CAS PubMed PubMed Central Google Scholar
  34. Dabney, J. et al. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc. Natl Acad. Sci. USA 110, 15758–15763 (2013)
    ADS CAS PubMed PubMed Central Google Scholar
  35. Damgaard, P. B. et al. Improving access to endogenous DNA in ancient bones and teeth. Sci. Rep. 5, 11184 (2015)
    Article ADS PubMed PubMed Central Google Scholar
  36. Korlević, P. et al. Reducing microbial and human contamination in DNA extractions from ancient bones and teeth. Biotechniques 59, 87–93 (2015)
    Article CAS PubMed Google Scholar
  37. Rohland, N., Harney, E., Mallick, S., Nordenfelt, S. & Reich, D. Partial uracil–DNA–glycosylase treatment for screening of ancient DNA. Philos. Trans. R. Soc. Lond. B 370, 20130624 (2015)
    Article CAS Google Scholar
  38. Briggs, A. W. et al. Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Nucleic Acids Res. 38, e87 (2010)
    Article CAS PubMed Google Scholar
  39. Maricic, T., Whitten, M. & Pääbo, S. Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS ONE 5, e14004 (2010)
    Article ADS CAS PubMed PubMed Central Google Scholar
  40. Kircher, M., Sawyer, S. & Meyer, M. Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Res. 40, e3 (2012)
    Article CAS PubMed Google Scholar
  41. Behar, D. M. et al. A ‘Copernican’ reassessment of the human mitochondrial DNA tree from its root. Am. J. Hum. Genet. 90, 675–684 (2012)
    Article CAS PubMed PubMed Central Google Scholar
  42. Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics 25, 1754–1760 (2009)
    CAS PubMed PubMed Central Google Scholar
  43. Fu, Q. et al. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr. Biol. 23, 553–559 (2013)
    Article CAS PubMed PubMed Central Google Scholar
  44. Sawyer, S., Krause, J., Guschanski, K., Savolainen, V. & Pääbo, S. Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS ONE 7, e34131 (2012)
    Article ADS CAS PubMed PubMed Central Google Scholar
  45. Korneliussen, T. S., Albrechtsen, A. & Nielsen, R. ANGSD: analysis of next generation sequencing data. BMC Bioinformatics 15, 356 (2014)
    Article PubMed PubMed Central Google Scholar
  46. Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078–2079 (2009)
    PubMed PubMed Central Google Scholar
  47. Weissensteiner, H. et al. HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing. Nucleic Acids Res. 44, W58–W63 (2016)
    Article CAS PubMed PubMed Central Google Scholar
  48. van Oven, M. & Kayser, M. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum. Mutat. 30, E386–E394 (2009)
    Article PubMed Google Scholar
  49. Patterson, N. et al. Ancient admixture in human history. Genetics 192, 1065–1093 (2012)
    PubMed PubMed Central Google Scholar
  50. Raghavan, M. et al. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505, 87–91 (2014)
    Article ADS CAS PubMed Google Scholar
  51. Omrak, A. et al. Genomic evidence establishes Anatolia as the source of the European Neolithic gene pool. Curr. Biol. 26, 270–275 (2016)
    Article CAS PubMed Google Scholar
  52. Gallego Llorente, M. et al. Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa. Science 350, 820–822 (2015)
    Article ADS CAS PubMed Google Scholar
  53. Fu, Q. et al. The genetic history of Ice Age Europe. Nature 534, 200–205 (2016)
    Article ADS CAS PubMed PubMed Central Google Scholar
  54. Kılınç, G. M. et al. The demographic development of the first farmers in Anatolia. Curr. Biol. 26, 2659–2666 (2016)
    Article CAS PubMed PubMed Central Google Scholar
  55. Gallego-Llorente, M. et al. The genetics of an early Neolithic pastoralist from the Zagros, Iran. Sci. Rep. 6, 31326 (2016)
    Article ADS CAS PubMed PubMed Central Google Scholar
  56. Olalde, I. et al. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature 507, 225–228 (2014)
    Article ADS CAS PubMed PubMed Central Google Scholar
  57. Hofmanová, Z. et al. Early farmers from across Europe directly descended from Neolithic Aegeans. Proc. Natl Acad. Sci. USA 113, 6886–6891 (2016)
    Article CAS PubMed PubMed Central Google Scholar
  58. Patterson, N., Price, A. L. & Reich, D. Population structure and eigenanalysis. PLoS Genet. 2, e190 (2006)
    Article CAS PubMed PubMed Central Google Scholar
  59. Purcell, S. et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559–575 (2007)
    Article CAS PubMed PubMed Central Google Scholar
  60. Busing, F. M. T. A., Meijer, E. & Van Der Leeden, R. Delete-m jackknife for unequal m. Stat. Comput. 9, 3–8 (1999)
    Article Google Scholar
  61. Rojo-Guerra, M. Á ., Kunst, M ., Garrido-Pena, R . & García-Martínez de Lagrán, I. & Morán-Dauchez, G. Un desafío a la eternidad. Tumbas monumentales del Valle de Ambrona (Memorias Arqueología en Castilla y León 14) (Junta de Castilla y León, 2005)
  62. Gamba, C. et al. Genome flux and stasis in a five millennium transect of European prehistory. Nat. Commun. 5, 5257 (2014)
    Article ADS CAS PubMed Google Scholar

Download references

Acknowledgements

We thank D. Anthony, J. Koch, I. Mathieson and C. Renfrew for comments; A. Cooper for support from the Australian Centre for Ancient DNA; the Bristol Radiocarbon Accelerator Mass Spectrometry Facility (BRAMS); A. C. Sousa, A. M. Cólliga, L. Loe, C. Roth, E. Carmona Ballesteros, M. Kunst, S.-A. Coupar, M. Giesen, T. Lord, M. Green, A. Chamberlain and G. Drinkall for assistance with samples; E. Willerslev for supporting several co-authors at the Centre for GeoGenetics; the Museo Arqueológico Regional de la Comunidad de Madrid, the Hunterian Museum, University of Glasgow, the Orkney Museum, the Museu Municipal de Torres Vedras, the Great North Museum: Hancock, the Society of Antiquaries of Newcastle upon Tyne, the Sunderland Museum, the National Museum of Wales, the Duckworth Laboratory, the Wiltshire Museum, the Wells Museum, the Brighton Museum, the Somerset Heritage Museum and the Museum of London for facilitating sample collection. Support for this project was provided by Czech Academy of Sciences grant RVO:67985912; by the Momentum Mobility Research Group of the Hungarian Academy of Sciences; by the Wellcome Trust (100713/Z/12/Z); by Irish Research Council grant GOIPG/2013/36 to D.F.; by the Heidelberg Academy of Sciences (WIN project ‘Times of Upheaval’) to P.W.S., J.K. and A.Mi.; by the Swedish Foundation for Humanities and Social Sciences grant M16-0455:1 to K.Kr.; by the National Science Centre, Poland grant DEC-2013/10/E/HS3/00141 to M.Fu.; by Obra Social La Caixa and by a Spanish MINECO grant BFU2015-64699-P to C.L.-F.; by a Spanish MINECO grant HAR2016-77600-P to C.L., P.R. and C.Bl.; by the NSF Archaeometry program BCS-1460369 to D.J.K.; by the NFS Archaeology program BCS-1725067 to D.J.K. and T.Ha.; and by an Allen Discovery Center grant from the Paul Allen Foundation, US National Science Foundation HOMINID grant BCS-1032255, US National Institutes of Health grant GM100233, and the Howard Hughes Medical Institute to D.R.

Author information

Author notes

  1. Ian Armit, Kristian Kristiansen, Ron Pinhasi, Wolfgang Haak, Ian Barnes, Carles Lalueza-Fox and David Reich: These authors jointly supervised this work.

Authors and Affiliations

  1. Department of Genetics, Harvard Medical School, Boston, 02115, Massachusetts, USA
    Iñigo Olalde, Nadin Rohland, Swapan Mallick, Mark Lipson, Iosif Lazaridis, Nasreen Broomandkhoshbacht, Matthew Ferry, Eadaoin Harney, Megan Michel, Jonas Oppenheimer, Kristin Stewardson & David Reich
  2. Department of Earth Sciences, Natural History Museum, London, SW7 5BD, UK
    Selina Brace, Thomas Booth & Ian Barnes
  3. Centre for GeoGenetics, Natural History Museum, University of Copenhagen, Copenhagen, 1350, Denmark
    Morten E. Allentoft
  4. School of Archaeological and Forensic Sciences, University of Bradford, Bradford, BD7 1DP, UK
    Ian Armit, Lindsey Büster & Laura Castells Navarro
  5. University of Gothenburg, Gothenburg, 405 30, Sweden
    Kristian Kristiansen & Karl-Göran Sjögren
  6. Broad Institute of MIT and Harvard, Cambridge, 02142, Massachusetts, USA
    Swapan Mallick, Iosif Lazaridis, Nick Patterson & David Reich
  7. Howard Hughes Medical Institute, Harvard Medical School, Boston, 02115, Massachusetts, USA
    Swapan Mallick, Nasreen Broomandkhoshbacht, Matthew Ferry, Megan Michel, Jonas Oppenheimer, Kristin Stewardson & David Reich
  8. Laboratory of Archaeogenetics, Institute of Archaeology, Research Centre for the Humanities, Hungarian Academy of Sciences, Budapest, 1097, Hungary
    Anna Szécsényi-Nagy & Balázs Gusztáv Mende
  9. Institute for Archaeological Sciences, Archaeo- and Palaeogenetics, University of Tübingen, Tübingen, 72070, Germany
    Alissa Mittnik & Saskia Pfrengle
  10. Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, 07745, Germany
    Alissa Mittnik
  11. Department of Human Genetics, Leiden University Medical Center, Leiden, 2333 ZC, The Netherlands
    Eveline Altena & Peter de Knijff
  12. Department of Anthropology, The Pennsylvania State University, University Park, Pennsylvania, 16802, USA
    Thomas K. Harper
  13. Research Department of Genetics, Evolution and Environment, University College London, London, WC1E 6BT, UK
    Yoan Diekmann, Zuzana Faltyskova & Mark G. Thomas
  14. Earth Institute, University College Dublin, Dublin 4, Ireland
    Daniel Fernandes, Olivia Cheronet & Ron Pinhasi
  15. Department of Anthropology, University of Vienna, Vienna, 1090, Austria
    Daniel Fernandes, Olivia Cheronet & Ron Pinhasi
  16. Department of Life Science, Research Center for Anthropology and Health, University of Coimbra, Coimbra, 3000-456, Portugal
    Daniel Fernandes
  17. Wessex Archaeology, Salisbury, SP4 6EB, UK
    Alistair Barclay, Kirsten Egging Dinwiddy & Jacqueline I. McKinley
  18. Center of Natural and Cultural History of Man, Danube Private University, Krems, 3500, Austria
    Kurt Werner Alt
  19. Department of Biomedical Engineering, Basel University, Basel, 4123, Switzerland
    Kurt Werner Alt
  20. Integrative Prehistory and Archaeological Science, Basel University, Basel, Switzerland
    Kurt Werner Alt
  21. Departamento de Prehistoria y Arqueología, Universidad Autónoma de Madrid, Madrid, 28049, Spain
    Corina Liesau, Patricia Ríos, Concepción Blasco & Rafael Garrido Pena
  22. ARGEA S.L., Madrid, 28011, Spain
    Jorge Vega Miguel & Roberto Menduiña García
  23. Área de Prehistoria, Universidad de Murcia, Murcia, 30001, Spain
    Azucena Avilés Fernández, María Haber-Uriarte & Joaquín Lomba Maurandi
  24. Institute of Archaeology, Research Centre for the Humanities, Hungarian Academy of Sciences, Budapest, 1097, Hungary
    Eszter Bánffy, Gabriella Kulcsár, Viktória Kiss & Kitti Köhler
  25. Romano-Germanic Commission, German Archaeological Institute, Frankfurt am Main, 60325, Germany
    Eszter Bánffy
  26. Museo Archeologico Nazionale di Parma, Parma, 43100, Italy
    Maria Bernabò-Brea
  27. INRAP, Institut National de Recherches Archéologiques Préventives, Buffard, 25440, France
    David Billoin
  28. School of History, Classics and Archaeology, University of Edinburgh, Edinburgh, EH8 9AG, UK
    Clive Bonsall & Kathleen McSweeney
  29. 10 Merchiston Gardens, Edinburgh, EH10 5DD, UK
    Laura Bonsall
  30. Oxford Archaeology, Oxford, OX2 0ES, UK
    Tim Allen, Gill Hey & Fraser Brown
  31. Department of Archaeology and Anthropology, University of Bristol, Bristol, BS8 1UU, UK
    Sophie Carver & Volker Heyd
  32. Department of Archaeology, BioArCh, University of York, York, YO10 5DD, UK
    Oliver E. Craig
  33. Scottish Universities Environmental Research Centre, East Kilbride, G75 0QF, UK
    Gordon T. Cook
  34. Institute of Archaeology, University of Oxford, Oxford, OX1 2PG, UK
    Barry Cunliffe
  35. University of Burgundy, Dijon, 21000, France
    Anthony Denaire
  36. Oxford Archaeology East, Cambridge, CB23 8SQ, UK
    Natasha Dodwell & Richard Mortimer
  37. Institute of Archaeology, Czech Academy of Sciences, Prague, 118 01, Czech Republic
    Michal Ernée & Miroslav Dobeš
  38. Department of Archaeology, Cambridge Archaeological Unit, University of Cambridge, Cambridge, CB3 0DT, UK
    Christopher Evans, Benjamin Neil & Marcus Brittain
  39. Labrys o.p.s., Prague, 198 00, Czech Republic
    Milan Kuchařík
  40. Museu i Poblat Ibèric de Ca n'Oliver, Cerdanyola del Vallès, 08290, Spain
    Joan Francès Farré
  41. School of History, Classics & Archaeology, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
    Chris Fowler
  42. INRAP, Institut National de Recherches Archéologiques Préventives, Nice, 06300, France
    Michiel Gazenbeek
  43. Institute of Zoology and Biomedical Research, Jagiellonian University, Kraków, 31-007, Poland
    Elżbieta Haduch
  44. Great Orme Mines, Great Orme, Llandudno, LL30 2XG, UK
    Nick Jowett
  45. Bristol Radiocarbon Accelerator Mass Spectrometry Facility, University of Bristol, Bristol, BS8 1UU, UK
    Timothy Knowles
  46. Institut für Vor- und Frühgeschichtliche Archäologie und Provinzialrömische Archäologie, Ludwig-Maximilians-Universität München, Munich, 80539, Germany
    Ken Massy & Philipp W. Stockhammer
  47. INRAP, Institut National de Recherches Archéologiques Préventives, Strasbourg, 67100, France
    Philippe Lefranc
  48. Université Paul-Valéry - Montpellier 3, UMR 5140 ASM, Montpellier, 34199, France
    Olivier Lemercier
  49. INRAP, Institut National de Recherches Archéologiques Préventives, Metz, 57063, France
    Arnaud Lefebvre
  50. UMR 5199, Pacea, équipe A3P, Université de Bordeaux, Talence, 33400, France
    Arnaud Lefebvre
  51. TRÉBEDE, Patrimonio y Cultura SL, Torres de la Alameda, 28813, Spain
    César Heras Martínez & Ana Bastida Ramírez
  52. Departamento de Ciencias de la Vida, Universidad de Alcalá, Alcalá de Henares, 28801, Spain
    César Heras Martínez & Virginia Galera Olmo
  53. Instituto Universitario de Investigación en Ciencias Policiales (IUICP), Alcalá de Henares, 28801, Spain
    César Heras Martínez & Virginia Galera Olmo
  54. Archaeom, Departament de Prehistòria, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Spain
    Tona Majó
  55. Department of Biology, University of Florence, Florence, 50121, Italy
    Alessandra Modi & David Caramelli
  56. Salisbury Ltd, Budaörs, 2040, Hungary
    András Czene
  57. Ferenczy Museum Center, Szentendre, 2100, Hungary
    Róbert Patay
  58. Budapest History Museum, Budapest, 1014, Hungary
    Anna Endrődi
  59. Department of Biological Anthropology, Eötvös Loránd University, Budapest, 1117, Hungary
    Tamás Hajdu & Tamás Szeniczey
  60. Hungarian Natural History Museum, Budapest, 1083, Hungary
    Tamás Hajdu & Zsolt Bernert
  61. Déri Museum, Debrecen, 4026, Hungary
    János Dani
  62. Historic Environment Scotland, Edinburgh, EH9 1SH, UK
    Maya Hoole
  63. Humanities Institute, University College Dublin, Dublin 4, Ireland
    Denise Keating
  64. Department of Anthropology, National Museum, Prague, 115 79, Czech Republic
    Petr Velemínský
  65. Soprintendenza Archeologia belle arti e paesaggio per la città metropolitana di Cagliari e per le province di Oristano e Sud Sardegna, Cagliari, 9124, Italy
    Francesca Candilio
  66. Physical Anthropology Section, University of Philadelphia Museum of Archaeology and Anthropology, Philadelphia, 19104, Pennsylvania, USA
    Francesca Candilio
  67. Department of Environmental Biology, Sapienza University of Rome, Rome, 00185, Italy
    Francesca Candilio
  68. 46 Cuidad Real Street, Parla, 28982, Spain
    Raúl Flores Fernández
  69. Departamento de Prehistoria, Universidad Complutense de Madrid, Madrid, 28040, Spain
    Ana-Mercedes Herrero-Corral
  70. Soprintendenza del Mare, Palermo, 90133, Italy
    Sebastiano Tusa
  71. Facoltà di Lettere e Filosofia, Università di Palermo, Palermo, 90133, Italy
    Emiliano Carnieri
  72. Soprintendenza per i beni culturali e ambientali di Trapani, Trapani, 91100, Italy
    Luigi Lentini
  73. Prima Archeologia del Mediterraneo, Partanna, 91028, Italy
    Antonella Valenti
  74. Università degli Studi di Palermo, Agrigento, 92100, Italy
    Alessandro Zanini
  75. Archaeological Research Services Ltd, Bakewell, DE45 1HB, UK
    Clive Waddington
  76. Departamento de Prehistoria, Facultad de Filosofía y Letras, Universidad de Valladolid, Valladolid, 47011, Spain
    Germán Delibes & Elisa Guerra-Doce
  77. Albion Archaeology, Bedford, MK42 0AS, UK
    Mike Luke
  78. Department F.-A. Forel for Environmental and Aquatic Sciences, Laboratory of Prehistoric Archaeology and Anthropology, University of Geneva, Geneva 4, Switzerland
    Jocelyne Desideri & Marie Besse
  79. General Department of Cultural Heritage Rhineland Palatinate, Department of Archaeology, Mainz, 55116, Germany
    Günter Brücken
  80. Institute of Archaeology, University of Wroclaw, Wrocław, 50-137, Poland
    Mirosław Furmanek, Agata Hałuszko & Maksym Mackiewicz
  81. Institute of Archaeology, Silesian University in Opava, Opava, 746 01, Czech Republic
    Artur Rapiński
  82. Department of Archaeology, University of Exeter, Exeter, EX4 4QE, UK
    Stephany Leach
  83. Departament de Prehistòria, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Spain
    Ignacio Soriano & Roberto Risch
  84. Department of Anthropology, University of Iowa, Iowa City, 52240, Iowa, USA
    Katina T. Lillios
  85. Centro de Arqueologia, Universidade de Lisboa, Lisboa, 1600-214, Portugal
    João Luís Cardoso & João Zilhão
  86. Universidade Aberta, Lisboa, 1269-001, Portugal
    João Luís Cardoso
  87. Institute of Archaeology, University College London, London, WC1H 0PY, UK
    Michael Parker Pearson
  88. Institute of Archaeology and Ethnology, Polish Academy of Sciences, Kraków, 31-016, Poland
    Piotr Włodarczak
  89. Laboratory for Archaeological Chemistry, University of Wisconsin-Madison, Madison, 53706, Wisconsin, USA
    T. Douglas Price
  90. University of Santiago de Compostela, Santiago de Compostela, 15782, Spain
    Pilar Prieto
  91. UMR 5204 Laboratoire Edytem, Université Savoie Mont Blanc, Chambéry, 73376, France
    Pierre-Jérôme Rey
  92. Department of Prehistory and Archaeology, Faculty of Philosophy and Letters, Valladolid University, Valladolid, 47011, Spain
    Manuel A. Rojo Guerra
  93. UMR 7268 ADES, CNRS, Aix-Marseille Univ, EFS, Faculté de médecine Nord, Marseille, 13015, France
    Aurore Schmitt
  94. Service archéologique, Conseil Général de la Haute-Savoie, Annecy, 74000, France
    Joël Serralongue
  95. Department of Life Science, Laboratory of Prehistory, Research Center for Anthropology and Health, University of Coimbra, Coimbra, 3000-456, Portugal
    Ana Maria Silva
  96. Institute for History of Medicine and Foreign Languages, First Faculty of Medicine, Charles University, Prague, 121 08, Czech Republic
    Václav Smrčka
  97. ANTEA Bureau d'étude en Archéologie, Habsheim, 68440, France
    Luc Vergnaud
  98. Institució Catalana de Recerca i Estudis Avançats, Barcelona, 08010, Spain
    João Zilhão
  99. Departament d'Història i Arqueologia, Universitat de Barcelona, Barcelona, 08001, Spain
    João Zilhão
  100. Oxford Radiocarbon Accelerator Unit, RLAHA, University of Oxford, Oxford, OX1 3QY, UK
    Thomas Higham
  101. Department of Anthropology & Institute for Energy and the Environment, The Pennsylvania State University, University Park, Pennsylvania, 16802, USA
    Douglas J. Kennett
  102. Faculty of Archaeology, Leiden University, Leiden, 2333 CC, The Netherlands
    Harry Fokkens
  103. Department of Philosophy, History, Culture and Art Studies, Section of Archaeology, University of Helsinki, Helsinki, 00014, Finland
    Volker Heyd
  104. National Museums Scotland, Edinburgh, EH1 1JF, UK
    Alison Sheridan
  105. Max Planck Institute for the Science of Human History, Jena, 07745, Germany
    Philipp W. Stockhammer, Johannes Krause & Wolfgang Haak
  106. Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, 5005, South Australia, Australia
    Wolfgang Haak
  107. Institute of Evolutionary Biology, CSIC-Universitat Pompeu Fabra, Barcelona, 08003, Spain
    Carles Lalueza-Fox

Authors

  1. Iñigo Olalde
    You can also search for this author inPubMed Google Scholar
  2. Selina Brace
    You can also search for this author inPubMed Google Scholar
  3. Morten E. Allentoft
    You can also search for this author inPubMed Google Scholar
  4. Ian Armit
    You can also search for this author inPubMed Google Scholar
  5. Kristian Kristiansen
    You can also search for this author inPubMed Google Scholar
  6. Thomas Booth
    You can also search for this author inPubMed Google Scholar
  7. Nadin Rohland
    You can also search for this author inPubMed Google Scholar
  8. Swapan Mallick
    You can also search for this author inPubMed Google Scholar
  9. Anna Szécsényi-Nagy
    You can also search for this author inPubMed Google Scholar
  10. Alissa Mittnik
    You can also search for this author inPubMed Google Scholar
  11. Eveline Altena
    You can also search for this author inPubMed Google Scholar
  12. Mark Lipson
    You can also search for this author inPubMed Google Scholar
  13. Iosif Lazaridis
    You can also search for this author inPubMed Google Scholar
  14. Thomas K. Harper
    You can also search for this author inPubMed Google Scholar
  15. Nick Patterson
    You can also search for this author inPubMed Google Scholar
  16. Nasreen Broomandkhoshbacht
    You can also search for this author inPubMed Google Scholar
  17. Yoan Diekmann
    You can also search for this author inPubMed Google Scholar
  18. Zuzana Faltyskova
    You can also search for this author inPubMed Google Scholar
  19. Daniel Fernandes
    You can also search for this author inPubMed Google Scholar
  20. Matthew Ferry
    You can also search for this author inPubMed Google Scholar
  21. Eadaoin Harney
    You can also search for this author inPubMed Google Scholar
  22. Peter de Knijff
    You can also search for this author inPubMed Google Scholar
  23. Megan Michel
    You can also search for this author inPubMed Google Scholar
  24. Jonas Oppenheimer
    You can also search for this author inPubMed Google Scholar
  25. Kristin Stewardson
    You can also search for this author inPubMed Google Scholar
  26. Alistair Barclay
    You can also search for this author inPubMed Google Scholar
  27. Kurt Werner Alt
    You can also search for this author inPubMed Google Scholar
  28. Corina Liesau
    You can also search for this author inPubMed Google Scholar
  29. Patricia Ríos
    You can also search for this author inPubMed Google Scholar
  30. Concepción Blasco
    You can also search for this author inPubMed Google Scholar
  31. Jorge Vega Miguel
    You can also search for this author inPubMed Google Scholar
  32. Roberto Menduiña García
    You can also search for this author inPubMed Google Scholar
  33. Azucena Avilés Fernández
    You can also search for this author inPubMed Google Scholar
  34. Eszter Bánffy
    You can also search for this author inPubMed Google Scholar
  35. Maria Bernabò-Brea
    You can also search for this author inPubMed Google Scholar
  36. David Billoin
    You can also search for this author inPubMed Google Scholar
  37. Clive Bonsall
    You can also search for this author inPubMed Google Scholar
  38. Laura Bonsall
    You can also search for this author inPubMed Google Scholar
  39. Tim Allen
    You can also search for this author inPubMed Google Scholar
  40. Lindsey Büster
    You can also search for this author inPubMed Google Scholar
  41. Sophie Carver
    You can also search for this author inPubMed Google Scholar
  42. Laura Castells Navarro
    You can also search for this author inPubMed Google Scholar
  43. Oliver E. Craig
    You can also search for this author inPubMed Google Scholar
  44. Gordon T. Cook
    You can also search for this author inPubMed Google Scholar
  45. Barry Cunliffe
    You can also search for this author inPubMed Google Scholar
  46. Anthony Denaire
    You can also search for this author inPubMed Google Scholar
  47. Kirsten Egging Dinwiddy
    You can also search for this author inPubMed Google Scholar
  48. Natasha Dodwell
    You can also search for this author inPubMed Google Scholar
  49. Michal Ernée
    You can also search for this author inPubMed Google Scholar
  50. Christopher Evans
    You can also search for this author inPubMed Google Scholar
  51. Milan Kuchařík
    You can also search for this author inPubMed Google Scholar
  52. Joan Francès Farré
    You can also search for this author inPubMed Google Scholar
  53. Chris Fowler
    You can also search for this author inPubMed Google Scholar
  54. Michiel Gazenbeek
    You can also search for this author inPubMed Google Scholar
  55. Rafael Garrido Pena
    You can also search for this author inPubMed Google Scholar
  56. María Haber-Uriarte
    You can also search for this author inPubMed Google Scholar
  57. Elżbieta Haduch
    You can also search for this author inPubMed Google Scholar
  58. Gill Hey
    You can also search for this author inPubMed Google Scholar
  59. Nick Jowett
    You can also search for this author inPubMed Google Scholar
  60. Timothy Knowles
    You can also search for this author inPubMed Google Scholar
  61. Ken Massy
    You can also search for this author inPubMed Google Scholar
  62. Saskia Pfrengle
    You can also search for this author inPubMed Google Scholar
  63. Philippe Lefranc
    You can also search for this author inPubMed Google Scholar
  64. Olivier Lemercier
    You can also search for this author inPubMed Google Scholar
  65. Arnaud Lefebvre
    You can also search for this author inPubMed Google Scholar
  66. César Heras Martínez
    You can also search for this author inPubMed Google Scholar
  67. Virginia Galera Olmo
    You can also search for this author inPubMed Google Scholar
  68. Ana Bastida Ramírez
    You can also search for this author inPubMed Google Scholar
  69. Joaquín Lomba Maurandi
    You can also search for this author inPubMed Google Scholar
  70. Tona Majó
    You can also search for this author inPubMed Google Scholar
  71. Jacqueline I. McKinley
    You can also search for this author inPubMed Google Scholar
  72. Kathleen McSweeney
    You can also search for this author inPubMed Google Scholar
  73. Balázs Gusztáv Mende
    You can also search for this author inPubMed Google Scholar
  74. Alessandra Modi
    You can also search for this author inPubMed Google Scholar
  75. Gabriella Kulcsár
    You can also search for this author inPubMed Google Scholar
  76. Viktória Kiss
    You can also search for this author inPubMed Google Scholar
  77. András Czene
    You can also search for this author inPubMed Google Scholar
  78. Róbert Patay
    You can also search for this author inPubMed Google Scholar
  79. Anna Endrődi
    You can also search for this author inPubMed Google Scholar
  80. Kitti Köhler
    You can also search for this author inPubMed Google Scholar
  81. Tamás Hajdu
    You can also search for this author inPubMed Google Scholar
  82. Tamás Szeniczey
    You can also search for this author inPubMed Google Scholar
  83. János Dani
    You can also search for this author inPubMed Google Scholar
  84. Zsolt Bernert
    You can also search for this author inPubMed Google Scholar
  85. Maya Hoole
    You can also search for this author inPubMed Google Scholar
  86. Olivia Cheronet
    You can also search for this author inPubMed Google Scholar
  87. Denise Keating
    You can also search for this author inPubMed Google Scholar
  88. Petr Velemínský
    You can also search for this author inPubMed Google Scholar
  89. Miroslav Dobeš
    You can also search for this author inPubMed Google Scholar
  90. Francesca Candilio
    You can also search for this author inPubMed Google Scholar
  91. Fraser Brown
    You can also search for this author inPubMed Google Scholar
  92. Raúl Flores Fernández
    You can also search for this author inPubMed Google Scholar
  93. Ana-Mercedes Herrero-Corral
    You can also search for this author inPubMed Google Scholar
  94. Sebastiano Tusa
    You can also search for this author inPubMed Google Scholar
  95. Emiliano Carnieri
    You can also search for this author inPubMed Google Scholar
  96. Luigi Lentini
    You can also search for this author inPubMed Google Scholar
  97. Antonella Valenti
    You can also search for this author inPubMed Google Scholar
  98. Alessandro Zanini
    You can also search for this author inPubMed Google Scholar
  99. Clive Waddington
    You can also search for this author inPubMed Google Scholar
  100. Germán Delibes
    You can also search for this author inPubMed Google Scholar
  101. Elisa Guerra-Doce
    You can also search for this author inPubMed Google Scholar
  102. Benjamin Neil
    You can also search for this author inPubMed Google Scholar
  103. Marcus Brittain
    You can also search for this author inPubMed Google Scholar
  104. Mike Luke
    You can also search for this author inPubMed Google Scholar
  105. Richard Mortimer
    You can also search for this author inPubMed Google Scholar
  106. Jocelyne Desideri
    You can also search for this author inPubMed Google Scholar
  107. Marie Besse
    You can also search for this author inPubMed Google Scholar
  108. Günter Brücken
    You can also search for this author inPubMed Google Scholar
  109. Mirosław Furmanek
    You can also search for this author inPubMed Google Scholar
  110. Agata Hałuszko
    You can also search for this author inPubMed Google Scholar
  111. Maksym Mackiewicz
    You can also search for this author inPubMed Google Scholar
  112. Artur Rapiński
    You can also search for this author inPubMed Google Scholar
  113. Stephany Leach
    You can also search for this author inPubMed Google Scholar
  114. Ignacio Soriano
    You can also search for this author inPubMed Google Scholar
  115. Katina T. Lillios
    You can also search for this author inPubMed Google Scholar
  116. João Luís Cardoso
    You can also search for this author inPubMed Google Scholar
  117. Michael Parker Pearson
    You can also search for this author inPubMed Google Scholar
  118. Piotr Włodarczak
    You can also search for this author inPubMed Google Scholar
  119. T. Douglas Price
    You can also search for this author inPubMed Google Scholar
  120. Pilar Prieto
    You can also search for this author inPubMed Google Scholar
  121. Pierre-Jérôme Rey
    You can also search for this author inPubMed Google Scholar
  122. Roberto Risch
    You can also search for this author inPubMed Google Scholar
  123. Manuel A. Rojo Guerra
    You can also search for this author inPubMed Google Scholar
  124. Aurore Schmitt
    You can also search for this author inPubMed Google Scholar
  125. Joël Serralongue
    You can also search for this author inPubMed Google Scholar
  126. Ana Maria Silva
    You can also search for this author inPubMed Google Scholar
  127. Václav Smrčka
    You can also search for this author inPubMed Google Scholar
  128. Luc Vergnaud
    You can also search for this author inPubMed Google Scholar
  129. João Zilhão
    You can also search for this author inPubMed Google Scholar
  130. David Caramelli
    You can also search for this author inPubMed Google Scholar
  131. Thomas Higham
    You can also search for this author inPubMed Google Scholar
  132. Mark G. Thomas
    You can also search for this author inPubMed Google Scholar
  133. Douglas J. Kennett
    You can also search for this author inPubMed Google Scholar
  134. Harry Fokkens
    You can also search for this author inPubMed Google Scholar
  135. Volker Heyd
    You can also search for this author inPubMed Google Scholar
  136. Alison Sheridan
    You can also search for this author inPubMed Google Scholar
  137. Karl-Göran Sjögren
    You can also search for this author inPubMed Google Scholar
  138. Philipp W. Stockhammer
    You can also search for this author inPubMed Google Scholar
  139. Johannes Krause
    You can also search for this author inPubMed Google Scholar
  140. Ron Pinhasi
    You can also search for this author inPubMed Google Scholar
  141. Wolfgang Haak
    You can also search for this author inPubMed Google Scholar
  142. Ian Barnes
    You can also search for this author inPubMed Google Scholar
  143. Carles Lalueza-Fox
    You can also search for this author inPubMed Google Scholar
  144. David Reich
    You can also search for this author inPubMed Google Scholar

Contributions

S.B., M.E.A., N.R., A.S.-N., A.Mi., N.B., M.Fe., E.Har., M.Mi., J.O., K.S., O.C., D.K., F.C., R.Pi., J.K., W.H., I.B. and D.R. performed or supervised laboratory work. G.T.C. and D.J.K. undertook the radiocarbon dating of a large fraction of samples. I.A., K.Kr., A.B., K.W.A., A.A.F., E.B., M.B.-B., D.B., C.Bl., J.V.M., R.M.G., C.Bo., L.Bo., T.A., L.Bü., S.C., L.C.N., O.E.C., G.T.C., B.C., A.D., K.E.D., N.D., M.E., C.E., M.K., J.F.F., H.F., C.F., M.G., R.G.P., M.H.-U., E.Had., G.H., N.J., T.K., K.Ma., S.P., P.L., O.L., A.L., C.H.M., V.G.O., A.B.R., J.L.M., T.M., J.I.M., K.Mc., B.G.M., A.Mo., G.K., V.K., A.C., R.Pa., A.E., K.Kö., T.Ha., T.S., J.Da., Z.B., M.H., P.V., M.D., F.B., R.F.F., A.-M.H.-C., S.T., E.C., L.L., A.V., A.Z., C.W., G.D., E.G.-D., B.N., M.Br., M.Lu., R.M., J.De., M.Be., G.B., M.Fu., A.H., M.Ma., A.R., S.L., I.S., K.T.L., J.L.C., C.L., M.P.P., P.W., T.D.P., P.P., P.-J.R., P.R., R.R., M.A.R.G., A.Sc., J.S., A.M.S., V.S., L.V., J.Z., D.C., T.Hi., V.H., A.Sh., K.-G.S., P.W.S., R.Pi., J.K., W.H., I.B., C.L.-F. and D.R. assembled archaeological material. I.O., S.M., T.B., A.Mi., E.A., M.Li., I.L., N.P., Y.D., Z.F., D.F., D.J.K., P.d.K., T.K.H., M.G.T. and D.R. analysed data. I.O., C.L.-F. and D.R. wrote the manuscript with input from all co-authors.

Corresponding authors

Correspondence toIñigo Olalde or David Reich.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Additional information

Reviewer Information Nature thanks C. Renfrew, E. Rhodes, M. Richards and the other anonymous reviewer(s) for their contribution to the peer review of this work.

Publisher's note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Extended data figures and tables

Extended Data Figure 1 Beaker-complex artefacts.

a, ‘All-Over-Cord’ Beaker from Bathgate, West Lothian, Scotland. Photograph: © National Museums Scotland. b, Beaker-complex grave goods from La Sima III barrow, Soria, Spain61. The set includes Beaker pots of the so-called ‘Maritime style’. Photograph: Junta de Castilla y León, Archivo Museo Numantino, Alejandro Plaza.

Extended Data Figure 2 Ancient individuals with previously published genome-wide data used in this study.

a, Sampling locations. b, Time ranges. WHG, western hunter-gatherers; EHG, eastern hunter-gatherers; SHG, Scandinavian hunter-gatherers; CHG, Caucasus hunter-gatherers; E, Early; M, Middle; L, Late; N, Neolithic; CA, Copper Age; and BA, Bronze Age. Map data from the R package ‘maps’.

Extended Data Figure 3 Population structure.

a, Principal component analysis of 990 present-day west Eurasian individuals (grey dots), with previously published (pale yellow) and new ancient samples projected onto the first two principal components. b, ADMIXTURE clustering analysis with K = 8 showing ancient individuals. WHG, western hunter-gatherers; EHG, eastern hunter-gatherers; SHG, Scandinavian hunter-gatherers; CHG, Caucasus hunter-gatherers; E, Early; M, Middle; L, Late; N, Neolithic; CA, Copper Age; and BA, Bronze Age.

Extended Data Figure 4 Hunter-gatherer affinities in Neolithic and Copper Age Europe.

Differential affinity to hunter-gatherer individuals (La Braña156 from Spain and KO162 from Hungary) in European populations before the emergence of the Beaker complex. See Supplementary Information section 8 for mixture proportions and standard errors computed with qpAdm2. E, Early; M, Middle; L, Late; N, Neolithic; CA, Copper Age; BA, Bronze Age; N_Iberia, northern Iberia; and C_Iberia, central Iberia.

Extended Data Figure 5 Modelling the relationships between Neolithic populations.

a, Admixture graph fitting a test population as a mixture of sources related to both Iberia_EN and Hungary_EN. b, Likelihood distribution for models with different proportions of the source related to Iberia_EN (green admixture edge in a) when the test population is England_N, Scotland_N or France_MLN. E, Early; M, Middle; L, Late; and N, Neolithic.

Extended Data Figure 6 Genetic affinity between Beaker-complex-associated individuals from southern England and the Netherlands.

a, _f_-statistics of the form _f_4(Mbuti, test; BK_Netherlands_Tui, BK_England_SOU). Negative values indicate that test population is closer to BK_Netherlands_Tui than to BK_England_SOU; positive values indicate that the test population is closer to BK_England_SOU than to BK_Netherlands_Tui. Error bars represent ± 3 standard errors. b, Outgroup _f_3-statistics of the form _f_3(Mbuti; BK_England_SOU, test) measuring shared genetic drift between BK_England_SOU and other Beaker-complex-associated groups. Error bars represent ± 1 standard errors. Number of individuals for each group is given in parentheses. BK_Netherlands_Tui, Beaker-complex-associated individuals from De Tuithoorn (Oostwoud, the Netherlands); BK_England_SOU, Beaker-complex-associated individuals from southern England. See Supplementary Table 1 for individuals associated with each population label.

Extended Data Figure 7 Derived allele frequencies at three SNPs of functional importance.

Error bars represent 1.9-log-likelihood support interval. The red dashed lines show allele frequencies in the 1000 Genomes Project (http://www.internationalgenome.org/) ‘GBR’ population (present-day people from Great Britain). Sample sizes are 50, 98 and 117 for Britain Neolithic, Britain Copper Age and Bronze Age, and central European Beaker-complex-associated individuals, respectively. BC, Beaker complex; CA, Copper Age; and BA, Bronze Age.

Extended Data Table 1 Sites from outside Britain with new genome-wide data reported in this study

Full size table

Extended Data Table 2 Sites from Britain with new genome-wide data reported in this study

Full size table

Extended Data Table 3 111 newly reported radiocarbon dates

Full size table

Supplementary information

Life Sciences Reporting Summary (PDF 72 kb)

Supplementary Information

This file contains Supplementary Text and Data, Supplementary Figures 1-5, Supplementary Tables S1-S12 and Supplementary References. (PDF 6895 kb)

Supplementary Data

This file contains Supplementary Tables 1-5. Supplementary Table 1 shows the ancient individuals included in this study. Supplementary Table 2 contains mitochondrial haplogroup calls for individuals with newly reported data. Supplementary Table 3 contains mitochondrial haplogroup frequencies for relevant ancient populations. Supplementary Table 4 contains Y-chromosome calls for males with newly reported data and Supplementary Table 5 contains the radiocarbon database. (XLSX 282 kb)

PowerPoint slides

Rights and permissions

About this article

Cite this article

Olalde, I., Brace, S., Allentoft, M. et al. The Beaker phenomenon and the genomic transformation of northwest Europe.Nature 555, 190–196 (2018). https://doi.org/10.1038/nature25738

Download citation