The Beaker phenomenon and the genomic transformation of northwest Europe (original) (raw)
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European Nucleotide Archive
Change history
21 March 2018
Please see accompanying Erratum (https://doi.org/10.1038/nature26164). The surname of author Alessandra Modi was incorrectly listed as ‘Mod’. The original Article has been corrected online.
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Acknowledgements
We thank D. Anthony, J. Koch, I. Mathieson and C. Renfrew for comments; A. Cooper for support from the Australian Centre for Ancient DNA; the Bristol Radiocarbon Accelerator Mass Spectrometry Facility (BRAMS); A. C. Sousa, A. M. Cólliga, L. Loe, C. Roth, E. Carmona Ballesteros, M. Kunst, S.-A. Coupar, M. Giesen, T. Lord, M. Green, A. Chamberlain and G. Drinkall for assistance with samples; E. Willerslev for supporting several co-authors at the Centre for GeoGenetics; the Museo Arqueológico Regional de la Comunidad de Madrid, the Hunterian Museum, University of Glasgow, the Orkney Museum, the Museu Municipal de Torres Vedras, the Great North Museum: Hancock, the Society of Antiquaries of Newcastle upon Tyne, the Sunderland Museum, the National Museum of Wales, the Duckworth Laboratory, the Wiltshire Museum, the Wells Museum, the Brighton Museum, the Somerset Heritage Museum and the Museum of London for facilitating sample collection. Support for this project was provided by Czech Academy of Sciences grant RVO:67985912; by the Momentum Mobility Research Group of the Hungarian Academy of Sciences; by the Wellcome Trust (100713/Z/12/Z); by Irish Research Council grant GOIPG/2013/36 to D.F.; by the Heidelberg Academy of Sciences (WIN project ‘Times of Upheaval’) to P.W.S., J.K. and A.Mi.; by the Swedish Foundation for Humanities and Social Sciences grant M16-0455:1 to K.Kr.; by the National Science Centre, Poland grant DEC-2013/10/E/HS3/00141 to M.Fu.; by Obra Social La Caixa and by a Spanish MINECO grant BFU2015-64699-P to C.L.-F.; by a Spanish MINECO grant HAR2016-77600-P to C.L., P.R. and C.Bl.; by the NSF Archaeometry program BCS-1460369 to D.J.K.; by the NFS Archaeology program BCS-1725067 to D.J.K. and T.Ha.; and by an Allen Discovery Center grant from the Paul Allen Foundation, US National Science Foundation HOMINID grant BCS-1032255, US National Institutes of Health grant GM100233, and the Howard Hughes Medical Institute to D.R.
Author information
Author notes
- Ian Armit, Kristian Kristiansen, Ron Pinhasi, Wolfgang Haak, Ian Barnes, Carles Lalueza-Fox and David Reich: These authors jointly supervised this work.
Authors and Affiliations
- Department of Genetics, Harvard Medical School, Boston, 02115, Massachusetts, USA
Iñigo Olalde, Nadin Rohland, Swapan Mallick, Mark Lipson, Iosif Lazaridis, Nasreen Broomandkhoshbacht, Matthew Ferry, Eadaoin Harney, Megan Michel, Jonas Oppenheimer, Kristin Stewardson & David Reich - Department of Earth Sciences, Natural History Museum, London, SW7 5BD, UK
Selina Brace, Thomas Booth & Ian Barnes - Centre for GeoGenetics, Natural History Museum, University of Copenhagen, Copenhagen, 1350, Denmark
Morten E. Allentoft - School of Archaeological and Forensic Sciences, University of Bradford, Bradford, BD7 1DP, UK
Ian Armit, Lindsey Büster & Laura Castells Navarro - University of Gothenburg, Gothenburg, 405 30, Sweden
Kristian Kristiansen & Karl-Göran Sjögren - Broad Institute of MIT and Harvard, Cambridge, 02142, Massachusetts, USA
Swapan Mallick, Iosif Lazaridis, Nick Patterson & David Reich - Howard Hughes Medical Institute, Harvard Medical School, Boston, 02115, Massachusetts, USA
Swapan Mallick, Nasreen Broomandkhoshbacht, Matthew Ferry, Megan Michel, Jonas Oppenheimer, Kristin Stewardson & David Reich - Laboratory of Archaeogenetics, Institute of Archaeology, Research Centre for the Humanities, Hungarian Academy of Sciences, Budapest, 1097, Hungary
Anna Szécsényi-Nagy & Balázs Gusztáv Mende - Institute for Archaeological Sciences, Archaeo- and Palaeogenetics, University of Tübingen, Tübingen, 72070, Germany
Alissa Mittnik & Saskia Pfrengle - Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, 07745, Germany
Alissa Mittnik - Department of Human Genetics, Leiden University Medical Center, Leiden, 2333 ZC, The Netherlands
Eveline Altena & Peter de Knijff - Department of Anthropology, The Pennsylvania State University, University Park, Pennsylvania, 16802, USA
Thomas K. Harper - Research Department of Genetics, Evolution and Environment, University College London, London, WC1E 6BT, UK
Yoan Diekmann, Zuzana Faltyskova & Mark G. Thomas - Earth Institute, University College Dublin, Dublin 4, Ireland
Daniel Fernandes, Olivia Cheronet & Ron Pinhasi - Department of Anthropology, University of Vienna, Vienna, 1090, Austria
Daniel Fernandes, Olivia Cheronet & Ron Pinhasi - Department of Life Science, Research Center for Anthropology and Health, University of Coimbra, Coimbra, 3000-456, Portugal
Daniel Fernandes - Wessex Archaeology, Salisbury, SP4 6EB, UK
Alistair Barclay, Kirsten Egging Dinwiddy & Jacqueline I. McKinley - Center of Natural and Cultural History of Man, Danube Private University, Krems, 3500, Austria
Kurt Werner Alt - Department of Biomedical Engineering, Basel University, Basel, 4123, Switzerland
Kurt Werner Alt - Integrative Prehistory and Archaeological Science, Basel University, Basel, Switzerland
Kurt Werner Alt - Departamento de Prehistoria y Arqueología, Universidad Autónoma de Madrid, Madrid, 28049, Spain
Corina Liesau, Patricia Ríos, Concepción Blasco & Rafael Garrido Pena - ARGEA S.L., Madrid, 28011, Spain
Jorge Vega Miguel & Roberto Menduiña García - Área de Prehistoria, Universidad de Murcia, Murcia, 30001, Spain
Azucena Avilés Fernández, María Haber-Uriarte & Joaquín Lomba Maurandi - Institute of Archaeology, Research Centre for the Humanities, Hungarian Academy of Sciences, Budapest, 1097, Hungary
Eszter Bánffy, Gabriella Kulcsár, Viktória Kiss & Kitti Köhler - Romano-Germanic Commission, German Archaeological Institute, Frankfurt am Main, 60325, Germany
Eszter Bánffy - Museo Archeologico Nazionale di Parma, Parma, 43100, Italy
Maria Bernabò-Brea - INRAP, Institut National de Recherches Archéologiques Préventives, Buffard, 25440, France
David Billoin - School of History, Classics and Archaeology, University of Edinburgh, Edinburgh, EH8 9AG, UK
Clive Bonsall & Kathleen McSweeney - 10 Merchiston Gardens, Edinburgh, EH10 5DD, UK
Laura Bonsall - Oxford Archaeology, Oxford, OX2 0ES, UK
Tim Allen, Gill Hey & Fraser Brown - Department of Archaeology and Anthropology, University of Bristol, Bristol, BS8 1UU, UK
Sophie Carver & Volker Heyd - Department of Archaeology, BioArCh, University of York, York, YO10 5DD, UK
Oliver E. Craig - Scottish Universities Environmental Research Centre, East Kilbride, G75 0QF, UK
Gordon T. Cook - Institute of Archaeology, University of Oxford, Oxford, OX1 2PG, UK
Barry Cunliffe - University of Burgundy, Dijon, 21000, France
Anthony Denaire - Oxford Archaeology East, Cambridge, CB23 8SQ, UK
Natasha Dodwell & Richard Mortimer - Institute of Archaeology, Czech Academy of Sciences, Prague, 118 01, Czech Republic
Michal Ernée & Miroslav Dobeš - Department of Archaeology, Cambridge Archaeological Unit, University of Cambridge, Cambridge, CB3 0DT, UK
Christopher Evans, Benjamin Neil & Marcus Brittain - Labrys o.p.s., Prague, 198 00, Czech Republic
Milan Kuchařík - Museu i Poblat Ibèric de Ca n'Oliver, Cerdanyola del Vallès, 08290, Spain
Joan Francès Farré - School of History, Classics & Archaeology, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
Chris Fowler - INRAP, Institut National de Recherches Archéologiques Préventives, Nice, 06300, France
Michiel Gazenbeek - Institute of Zoology and Biomedical Research, Jagiellonian University, Kraków, 31-007, Poland
Elżbieta Haduch - Great Orme Mines, Great Orme, Llandudno, LL30 2XG, UK
Nick Jowett - Bristol Radiocarbon Accelerator Mass Spectrometry Facility, University of Bristol, Bristol, BS8 1UU, UK
Timothy Knowles - Institut für Vor- und Frühgeschichtliche Archäologie und Provinzialrömische Archäologie, Ludwig-Maximilians-Universität München, Munich, 80539, Germany
Ken Massy & Philipp W. Stockhammer - INRAP, Institut National de Recherches Archéologiques Préventives, Strasbourg, 67100, France
Philippe Lefranc - Université Paul-Valéry - Montpellier 3, UMR 5140 ASM, Montpellier, 34199, France
Olivier Lemercier - INRAP, Institut National de Recherches Archéologiques Préventives, Metz, 57063, France
Arnaud Lefebvre - UMR 5199, Pacea, équipe A3P, Université de Bordeaux, Talence, 33400, France
Arnaud Lefebvre - TRÉBEDE, Patrimonio y Cultura SL, Torres de la Alameda, 28813, Spain
César Heras Martínez & Ana Bastida Ramírez - Departamento de Ciencias de la Vida, Universidad de Alcalá, Alcalá de Henares, 28801, Spain
César Heras Martínez & Virginia Galera Olmo - Instituto Universitario de Investigación en Ciencias Policiales (IUICP), Alcalá de Henares, 28801, Spain
César Heras Martínez & Virginia Galera Olmo - Archaeom, Departament de Prehistòria, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Spain
Tona Majó - Department of Biology, University of Florence, Florence, 50121, Italy
Alessandra Modi & David Caramelli - Salisbury Ltd, Budaörs, 2040, Hungary
András Czene - Ferenczy Museum Center, Szentendre, 2100, Hungary
Róbert Patay - Budapest History Museum, Budapest, 1014, Hungary
Anna Endrődi - Department of Biological Anthropology, Eötvös Loránd University, Budapest, 1117, Hungary
Tamás Hajdu & Tamás Szeniczey - Hungarian Natural History Museum, Budapest, 1083, Hungary
Tamás Hajdu & Zsolt Bernert - Déri Museum, Debrecen, 4026, Hungary
János Dani - Historic Environment Scotland, Edinburgh, EH9 1SH, UK
Maya Hoole - Humanities Institute, University College Dublin, Dublin 4, Ireland
Denise Keating - Department of Anthropology, National Museum, Prague, 115 79, Czech Republic
Petr Velemínský - Soprintendenza Archeologia belle arti e paesaggio per la città metropolitana di Cagliari e per le province di Oristano e Sud Sardegna, Cagliari, 9124, Italy
Francesca Candilio - Physical Anthropology Section, University of Philadelphia Museum of Archaeology and Anthropology, Philadelphia, 19104, Pennsylvania, USA
Francesca Candilio - Department of Environmental Biology, Sapienza University of Rome, Rome, 00185, Italy
Francesca Candilio - 46 Cuidad Real Street, Parla, 28982, Spain
Raúl Flores Fernández - Departamento de Prehistoria, Universidad Complutense de Madrid, Madrid, 28040, Spain
Ana-Mercedes Herrero-Corral - Soprintendenza del Mare, Palermo, 90133, Italy
Sebastiano Tusa - Facoltà di Lettere e Filosofia, Università di Palermo, Palermo, 90133, Italy
Emiliano Carnieri - Soprintendenza per i beni culturali e ambientali di Trapani, Trapani, 91100, Italy
Luigi Lentini - Prima Archeologia del Mediterraneo, Partanna, 91028, Italy
Antonella Valenti - Università degli Studi di Palermo, Agrigento, 92100, Italy
Alessandro Zanini - Archaeological Research Services Ltd, Bakewell, DE45 1HB, UK
Clive Waddington - Departamento de Prehistoria, Facultad de Filosofía y Letras, Universidad de Valladolid, Valladolid, 47011, Spain
Germán Delibes & Elisa Guerra-Doce - Albion Archaeology, Bedford, MK42 0AS, UK
Mike Luke - Department F.-A. Forel for Environmental and Aquatic Sciences, Laboratory of Prehistoric Archaeology and Anthropology, University of Geneva, Geneva 4, Switzerland
Jocelyne Desideri & Marie Besse - General Department of Cultural Heritage Rhineland Palatinate, Department of Archaeology, Mainz, 55116, Germany
Günter Brücken - Institute of Archaeology, University of Wroclaw, Wrocław, 50-137, Poland
Mirosław Furmanek, Agata Hałuszko & Maksym Mackiewicz - Institute of Archaeology, Silesian University in Opava, Opava, 746 01, Czech Republic
Artur Rapiński - Department of Archaeology, University of Exeter, Exeter, EX4 4QE, UK
Stephany Leach - Departament de Prehistòria, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Spain
Ignacio Soriano & Roberto Risch - Department of Anthropology, University of Iowa, Iowa City, 52240, Iowa, USA
Katina T. Lillios - Centro de Arqueologia, Universidade de Lisboa, Lisboa, 1600-214, Portugal
João Luís Cardoso & João Zilhão - Universidade Aberta, Lisboa, 1269-001, Portugal
João Luís Cardoso - Institute of Archaeology, University College London, London, WC1H 0PY, UK
Michael Parker Pearson - Institute of Archaeology and Ethnology, Polish Academy of Sciences, Kraków, 31-016, Poland
Piotr Włodarczak - Laboratory for Archaeological Chemistry, University of Wisconsin-Madison, Madison, 53706, Wisconsin, USA
T. Douglas Price - University of Santiago de Compostela, Santiago de Compostela, 15782, Spain
Pilar Prieto - UMR 5204 Laboratoire Edytem, Université Savoie Mont Blanc, Chambéry, 73376, France
Pierre-Jérôme Rey - Department of Prehistory and Archaeology, Faculty of Philosophy and Letters, Valladolid University, Valladolid, 47011, Spain
Manuel A. Rojo Guerra - UMR 7268 ADES, CNRS, Aix-Marseille Univ, EFS, Faculté de médecine Nord, Marseille, 13015, France
Aurore Schmitt - Service archéologique, Conseil Général de la Haute-Savoie, Annecy, 74000, France
Joël Serralongue - Department of Life Science, Laboratory of Prehistory, Research Center for Anthropology and Health, University of Coimbra, Coimbra, 3000-456, Portugal
Ana Maria Silva - Institute for History of Medicine and Foreign Languages, First Faculty of Medicine, Charles University, Prague, 121 08, Czech Republic
Václav Smrčka - ANTEA Bureau d'étude en Archéologie, Habsheim, 68440, France
Luc Vergnaud - Institució Catalana de Recerca i Estudis Avançats, Barcelona, 08010, Spain
João Zilhão - Departament d'Història i Arqueologia, Universitat de Barcelona, Barcelona, 08001, Spain
João Zilhão - Oxford Radiocarbon Accelerator Unit, RLAHA, University of Oxford, Oxford, OX1 3QY, UK
Thomas Higham - Department of Anthropology & Institute for Energy and the Environment, The Pennsylvania State University, University Park, Pennsylvania, 16802, USA
Douglas J. Kennett - Faculty of Archaeology, Leiden University, Leiden, 2333 CC, The Netherlands
Harry Fokkens - Department of Philosophy, History, Culture and Art Studies, Section of Archaeology, University of Helsinki, Helsinki, 00014, Finland
Volker Heyd - National Museums Scotland, Edinburgh, EH1 1JF, UK
Alison Sheridan - Max Planck Institute for the Science of Human History, Jena, 07745, Germany
Philipp W. Stockhammer, Johannes Krause & Wolfgang Haak - Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, 5005, South Australia, Australia
Wolfgang Haak - Institute of Evolutionary Biology, CSIC-Universitat Pompeu Fabra, Barcelona, 08003, Spain
Carles Lalueza-Fox
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Contributions
S.B., M.E.A., N.R., A.S.-N., A.Mi., N.B., M.Fe., E.Har., M.Mi., J.O., K.S., O.C., D.K., F.C., R.Pi., J.K., W.H., I.B. and D.R. performed or supervised laboratory work. G.T.C. and D.J.K. undertook the radiocarbon dating of a large fraction of samples. I.A., K.Kr., A.B., K.W.A., A.A.F., E.B., M.B.-B., D.B., C.Bl., J.V.M., R.M.G., C.Bo., L.Bo., T.A., L.Bü., S.C., L.C.N., O.E.C., G.T.C., B.C., A.D., K.E.D., N.D., M.E., C.E., M.K., J.F.F., H.F., C.F., M.G., R.G.P., M.H.-U., E.Had., G.H., N.J., T.K., K.Ma., S.P., P.L., O.L., A.L., C.H.M., V.G.O., A.B.R., J.L.M., T.M., J.I.M., K.Mc., B.G.M., A.Mo., G.K., V.K., A.C., R.Pa., A.E., K.Kö., T.Ha., T.S., J.Da., Z.B., M.H., P.V., M.D., F.B., R.F.F., A.-M.H.-C., S.T., E.C., L.L., A.V., A.Z., C.W., G.D., E.G.-D., B.N., M.Br., M.Lu., R.M., J.De., M.Be., G.B., M.Fu., A.H., M.Ma., A.R., S.L., I.S., K.T.L., J.L.C., C.L., M.P.P., P.W., T.D.P., P.P., P.-J.R., P.R., R.R., M.A.R.G., A.Sc., J.S., A.M.S., V.S., L.V., J.Z., D.C., T.Hi., V.H., A.Sh., K.-G.S., P.W.S., R.Pi., J.K., W.H., I.B., C.L.-F. and D.R. assembled archaeological material. I.O., S.M., T.B., A.Mi., E.A., M.Li., I.L., N.P., Y.D., Z.F., D.F., D.J.K., P.d.K., T.K.H., M.G.T. and D.R. analysed data. I.O., C.L.-F. and D.R. wrote the manuscript with input from all co-authors.
Corresponding authors
Correspondence toIñigo Olalde or David Reich.
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Additional information
Reviewer Information Nature thanks C. Renfrew, E. Rhodes, M. Richards and the other anonymous reviewer(s) for their contribution to the peer review of this work.
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Extended data figures and tables
Extended Data Figure 1 Beaker-complex artefacts.
a, ‘All-Over-Cord’ Beaker from Bathgate, West Lothian, Scotland. Photograph: © National Museums Scotland. b, Beaker-complex grave goods from La Sima III barrow, Soria, Spain61. The set includes Beaker pots of the so-called ‘Maritime style’. Photograph: Junta de Castilla y León, Archivo Museo Numantino, Alejandro Plaza.
Extended Data Figure 2 Ancient individuals with previously published genome-wide data used in this study.
a, Sampling locations. b, Time ranges. WHG, western hunter-gatherers; EHG, eastern hunter-gatherers; SHG, Scandinavian hunter-gatherers; CHG, Caucasus hunter-gatherers; E, Early; M, Middle; L, Late; N, Neolithic; CA, Copper Age; and BA, Bronze Age. Map data from the R package ‘maps’.
Extended Data Figure 3 Population structure.
a, Principal component analysis of 990 present-day west Eurasian individuals (grey dots), with previously published (pale yellow) and new ancient samples projected onto the first two principal components. b, ADMIXTURE clustering analysis with K = 8 showing ancient individuals. WHG, western hunter-gatherers; EHG, eastern hunter-gatherers; SHG, Scandinavian hunter-gatherers; CHG, Caucasus hunter-gatherers; E, Early; M, Middle; L, Late; N, Neolithic; CA, Copper Age; and BA, Bronze Age.
Extended Data Figure 4 Hunter-gatherer affinities in Neolithic and Copper Age Europe.
Differential affinity to hunter-gatherer individuals (La Braña156 from Spain and KO162 from Hungary) in European populations before the emergence of the Beaker complex. See Supplementary Information section 8 for mixture proportions and standard errors computed with qpAdm2. E, Early; M, Middle; L, Late; N, Neolithic; CA, Copper Age; BA, Bronze Age; N_Iberia, northern Iberia; and C_Iberia, central Iberia.
Extended Data Figure 5 Modelling the relationships between Neolithic populations.
a, Admixture graph fitting a test population as a mixture of sources related to both Iberia_EN and Hungary_EN. b, Likelihood distribution for models with different proportions of the source related to Iberia_EN (green admixture edge in a) when the test population is England_N, Scotland_N or France_MLN. E, Early; M, Middle; L, Late; and N, Neolithic.
Extended Data Figure 6 Genetic affinity between Beaker-complex-associated individuals from southern England and the Netherlands.
a, _f_-statistics of the form _f_4(Mbuti, test; BK_Netherlands_Tui, BK_England_SOU). Negative values indicate that test population is closer to BK_Netherlands_Tui than to BK_England_SOU; positive values indicate that the test population is closer to BK_England_SOU than to BK_Netherlands_Tui. Error bars represent ± 3 standard errors. b, Outgroup _f_3-statistics of the form _f_3(Mbuti; BK_England_SOU, test) measuring shared genetic drift between BK_England_SOU and other Beaker-complex-associated groups. Error bars represent ± 1 standard errors. Number of individuals for each group is given in parentheses. BK_Netherlands_Tui, Beaker-complex-associated individuals from De Tuithoorn (Oostwoud, the Netherlands); BK_England_SOU, Beaker-complex-associated individuals from southern England. See Supplementary Table 1 for individuals associated with each population label.
Extended Data Figure 7 Derived allele frequencies at three SNPs of functional importance.
Error bars represent 1.9-log-likelihood support interval. The red dashed lines show allele frequencies in the 1000 Genomes Project (http://www.internationalgenome.org/) ‘GBR’ population (present-day people from Great Britain). Sample sizes are 50, 98 and 117 for Britain Neolithic, Britain Copper Age and Bronze Age, and central European Beaker-complex-associated individuals, respectively. BC, Beaker complex; CA, Copper Age; and BA, Bronze Age.
Extended Data Table 1 Sites from outside Britain with new genome-wide data reported in this study
Extended Data Table 2 Sites from Britain with new genome-wide data reported in this study
Extended Data Table 3 111 newly reported radiocarbon dates
Supplementary information
Life Sciences Reporting Summary (PDF 72 kb)
Supplementary Information
This file contains Supplementary Text and Data, Supplementary Figures 1-5, Supplementary Tables S1-S12 and Supplementary References. (PDF 6895 kb)
Supplementary Data
This file contains Supplementary Tables 1-5. Supplementary Table 1 shows the ancient individuals included in this study. Supplementary Table 2 contains mitochondrial haplogroup calls for individuals with newly reported data. Supplementary Table 3 contains mitochondrial haplogroup frequencies for relevant ancient populations. Supplementary Table 4 contains Y-chromosome calls for males with newly reported data and Supplementary Table 5 contains the radiocarbon database. (XLSX 282 kb)
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Olalde, I., Brace, S., Allentoft, M. et al. The Beaker phenomenon and the genomic transformation of northwest Europe.Nature 555, 190–196 (2018). https://doi.org/10.1038/nature25738
- Received: 08 May 2017
- Accepted: 04 January 2018
- Published: 21 February 2018
- Issue Date: 08 March 2018
- DOI: https://doi.org/10.1038/nature25738