Genome-wide expression monitoring in Saccharomyces cerevisiae (original) (raw)
References
Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldmann, H., et al. 1996. Life with 6000 genes. Science274: 546–567. ArticleCAS Google Scholar
Goffeau, A., et al. 1997. The yeast genome directory. Nature387(suppl 1): 1–105. Google Scholar
Adams, M.D., Kelley, J.M., Gocayne, J.D., Dubnick, M., Polymeropoulos, M.H., Xiao, H., et al. 1991. Complementary DNA sequencing: expressed sequence tags and human genome project. Science252: 1651–1656. ArticleCAS Google Scholar
Lennon, G.G., and Lehrach, H. 1991. Hybridization analyses of arrayed cDNA libraries. Trends Genet.7: 314–317. ArticleCAS Google Scholar
Liang, P. and Pardee, A.B. 1992. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science257: 967–971. ArticleCAS Google Scholar
Okubo, K., Hori, N., Matoba, R., Niiyama, T., Fukushima, A., Kojima, Y., Matsubara, K. 1992. Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nature Genet.2: 173–179. ArticleCAS Google Scholar
Meier-Ewert, S., Maier, E., Ahmadi, A., Curtis, J., and Lehrach, H. 1993. An automated approach to generating expressed sequence catalogues. Nature361: 375–376. ArticleCAS Google Scholar
Velculescu, V.E., Zhang, L., Vogelstein, B., and Kinzler, K.W. 1995. Serial analysis of gene expression. Science270: 484–487. ArticleCAS Google Scholar
Zhao, N., Hashida, H., Takahashi, N., Misumi, Y., and Sakaki, Y. 1995. High-density cDNA filter analysis: a novel approach for large-scale, quantitative analysis of gene expression. Gene156: 207–213. ArticleCAS Google Scholar
Nguyen, C., Rocha, D., Granjeaud, S., Baldit, M., Bernard, K., Naquet, P., and Jordan, B.R. 1995. Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones. Genomics29: 207–216. ArticleCAS Google Scholar
Schena, M., Shalon, D., Davis, R.W., and Brown, P.O. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science270: 467–470. ArticleCAS Google Scholar
Ivanova, N.B. and Belyavsky, A.V. 1995. Identification of differentially expressed genes by restriction endonuclease-based gene expression fingerprinting. Nucl. Acids Res.23: 2954–2958. ArticleCAS Google Scholar
Shalon, D., Smith, S.J., and Brown, P.O. 1996. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization.Genome Res.6: 639–645. ArticleCAS Google Scholar
Prashar, Y. and Weissman, S.M. 1996. Analysis of differential gene expression by display of 3′ end restriction fragments of cDNAs. Proc. Natl. Acad Sci. USA93: 659–663. ArticleCAS Google Scholar
Pietu, G., Alibert, O., Guichard, V., Lamy, B., Bois, F., Leroy, E., et al. 1996. Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array. Genome Research6: 492–503. ArticleCAS Google Scholar
Lockhart, D.J., Dong, H., Byrne, M.C., Follettie, M.T., Gallo, M.V., Chee, M.S., et al. 1996. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nature Biotechnology14: 1675–1680. ArticleCAS Google Scholar
Burns, N., Grimwade, B., Ross-Macdonald, P.B., Choi, E.Y., Finberg, K., Roeder, G.S., and Snyder, M. 1994. Large-scale analysis of gene expression, protein localization, and gene disruption in Saccharomyces cerevisiae. Genes Dev.8: 1087–1105. ArticleCAS Google Scholar
Niedenthal, R.K., Riles, L., Johnston, M., and Hegemann, J.H., 1996. Fluorescent protein as a marker for gene expression and subcellular localization in budding yeast. Yeast12: 773–786. ArticleCAS Google Scholar
Shevchenko, A., Jensen, O.N., Podtelejnikov, A.V., Sagliocco, F., Wilm, M., Vorm, O., et al. 1996. Linking genome and pnoteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels. Proc. Natl. Acad. Sci. USA93: 14440–14445. ArticleCAS Google Scholar
Velculescu, V.E., Zhang, L., Zhou, W., Vogelstein, J., Basrai, M.A., Bassett, D.E. Jr., et al. 1997. Characterization of the yeast transcriptome. Cell88: 243–251. ArticleCAS Google Scholar
Richard, G.F., Fairhead, C., and Dujon, B. 1997. Complete transcriptional map of yeast chromosome XI in different life conditions. J. Mol. Biol.268: 303–321. ArticleCAS Google Scholar
Lashkari, D., DeRisi, J., McCusker, J., Namath, A., Gentile, C., Hwang, S., et al. 1997. Yeast genome microarrays for parallel genetic and gene expression analysis of the yeast genome. Proc. Natl. Acad. Sci. USA. In press.
Fodor, S.P.A., Read, J.L., Pirrung, M.C., Stryer, L., Lu, A.T., and Solas, D . 1991. Light-directed, spatially addressable parallel chemical synthesis. Science251: 767–773. ArticleCAS Google Scholar
Pease, A.C., Solas, D., Sullivan, E.J., Cronin, M.T., Holmes, C.P., and Fodor, S.P.A. 1994. Light-directed oligonucleotide arrays for rapid DNA sequence analysis. Proc. Natl. Acad. Sci. USA91: 5022–5026. ArticleCAS Google Scholar
Chee, M.S., Huang, X., Yang, R., Hubbell, E., Berno, A., Stern, D., et al. 1996. Accessing genetic information with high-density DNA arrays. Science274: 610–614. ArticleCAS Google Scholar
Iyer, V. and Struhl, K. 1996. Absolute mRNA levels and transcriptional initiation rates in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA93: 5208–5212. ArticleCAS Google Scholar
Hereford, L.M. and Rosbash, M. 1977. Number and distribution of polyadenylat-ed RNA sequences in yeast. Cell10: 453–462. ArticleCAS Google Scholar
Lewin, B. 1980. Gene expression, Vol. 2. Wiley-lnterscience, New York. Google Scholar
Michaelis, S. and Herskowitz, I. 1988. The a-factor pheromone of Saccharomyces cerevisiae is essential for mating. Mol. Cell Biol.8: 1309–1318. ArticleCAS Google Scholar
Burkholder, A.C. and Hartwell, L.H. 1985. The yeast alpha-factor receptor structural properties deduced from the sequence of the STE2 gene. Nucl. Acids Res.13: 8463–8475. ArticleCAS Google Scholar
Kurjan, J. and Herskowitz, I. 1982. Structure of a yeast pheromone gene (MF alpha): a putative alpha-factor precursor contains four tandem copies of mature alpha-factor. Cell30: 933–943. ArticleCAS Google Scholar
Singh, A., Chen, E.Y., Lugovoy, J.M., Chang, C.N., Hitzeman, R.A., and Seeburg, P.H. 1983. Saccharomyces cerevisiae contains two discrete genes coding for the alpha-factor pheromone. Nucl. Acids Res.11: 4049–4063. ArticleCAS Google Scholar
Hagen, D.C., McCaffrey, G., and Sprague, G.F. Jr. 1986. Evidence the yeast STE3 gene encodes a receptor for the peptide pheromone a factor: gene sequence and implications for the structure of the presumed receptor. Proc. Natl. Acad. Sci. USA83: 1418–1422. ArticleCAS Google Scholar
Garrels, J.I., Futcher, B., Kobayashi, R., Latter, G.I., Schwender, B., Volpe, T., et al. 1994. Protein identifications for a Saccharomyces cerevisiae protein database. Electrophoresis15: 1466–1486. ArticleCAS Google Scholar
Boucherie, H., Dujardin, G., Kermorgant, M., Monribot, C., Slonimski, P., and Perrot, M. 1995. Two-dimensional protein map of Saccharomyces cerevisiae: construction of a gene-protein index. Yeast11: 601–603. ArticleCAS Google Scholar
Maillet, I., Lagniel, G., Perrot, M., Boucherie, H., and Labarre, J. 1996. Rapid identification of yeast proteins in two-dimenstional gels. J. Biol. Chem.271: 10263–10270. ArticleCAS Google Scholar
Sagliocco, F., Guillemot, J.-C., Monribot, C., Capdevielle, J., Perrot, M., Ferran, E., Ferrara, P., and Boucherie, H. 1996. Identification of proteins of the yeast protein map using genetically manipulated strains and peptide mass fingerprinting. Yeast12: 1519–1533. ArticleCAS Google Scholar
Boucherie, H., Sagliocco, F., Joubert, R., Maillet, I., Labarre, J., and Perrot, M. 1996. Two-dimensional gel protein database of Saccharomyces cerevisiae. Electrophoresis17: 1683–1699. ArticleCAS Google Scholar
Smith, V., Botstein, D., and Brown, P.O. 1995. Genetic footprinting: a genomic strategy for determining a gene's function given it's sequence. Proc. Natl. Acad. Sci. USA92: 6479–6483. ArticleCAS Google Scholar
Smith, V., Chou, K.N., Lashkari, D., Botstein, D., and Brown, P.O. 1996. Functional analysis of the genes of yeast of yeast chromosome V by genetic foot-printing. Science274: 2069–2074. ArticleCAS Google Scholar
Shoemaker, D.D., Lashkari, D.A., Morris, D., Mittmann, M., and Davis, R.W. 1996. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nature Genet.14: 450–456. ArticleCAS Google Scholar
Ross-Macdonald, P., Sheehan, A., Roeder, G.S., and Snyder, M. 1997. A multipurpose transposon system for analyzing protein production, localization, and function in Saccharomyces cerevisiae.Proc. Natl. Acad. Sci. USA94: 190–195 ArticleCAS Google Scholar
Schmitt, M.E., Brown, T.A., and Trumpower, B.L. 1990. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae.Nucl. Acids Res.18: 3091–3092. ArticleCAS Google Scholar