Differential chromatin marking of introns and expressed exons by H3K36me3 (original) (raw)
Kouzarides, T. Chromatin modifications and their function. Cell128, 693–705 (2007). ArticleCAS Google Scholar
The C. elegans sequencing consortium. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science282, 2012–2018 (1998).
Fire, A. et al. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature391, 806–811 (1998). ArticleCAS Google Scholar
Timmons, L. & Fire, A. Specific interference by ingested dsRNA. Nature395, 854 (1998). ArticleCAS Google Scholar
Cui, M. & Han, M. Roles of chromatin factors in C. elegans development. WormBook doi/10.1895/wormbook.1.139.1 (2007).
Ercan, S. et al. X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation. Nat. Genet.39, 403–408 (2007). ArticleCAS Google Scholar
Whittle, C.M. et al. The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis. PLoS Genet.4, e1000187 (2008). Article Google Scholar
Bargmann, C.I. Chemosensation in C. elegans. WormBook doi/10.1895/wormbook.1.123.1 (2006).
Schneider, R. et al. Histone H3 lysine 4 methylation patterns in higher eukaryotic genes. Nat. Cell Biol.6, 73–77 (2004). ArticleCAS Google Scholar
Bernstein, B.E. et al. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell120, 169–181 (2005). ArticleCAS Google Scholar
Ng, H.H., Robert, F., Young, R.A. & Struhl, K. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell11, 709–719 (2003). ArticleCAS Google Scholar
Pokholok, D.K. et al. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell122, 517–527 (2005). ArticleCAS Google Scholar
Blumenthal, T. Trans-splicing and operons. WormBook doi/10.1895/wormbook.1.5.1 (2005).
Peters, A.H. et al. Partitioning and plasticity of repressive histone methylation states in mammalian chromatin. Mol. Cell12, 1577–1589 (2003). ArticleCAS Google Scholar
Martens, J.H. et al. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J.24, 800–812 (2005). ArticleCAS Google Scholar
Brinkman, A.B. et al. Histone modification patterns associated with the human X chromosome. EMBO Rep.7, 628–634 (2006). CASPubMedPubMed Central Google Scholar
Vakoc, C.R., Mandat, S.A., Olenchock, B.A. & Blobel, G.A. Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin. Mol. Cell19, 381–391 (2005). ArticleCAS Google Scholar
Barski, A. et al. High-resolution profiling of histone methylations in the human genome. Cell129, 823–837 (2007). ArticleCAS Google Scholar
Mikkelsen, T.S. et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature448, 553–560 (2007). ArticleCAS Google Scholar
Krogan, N.J. et al. Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II. Mol. Cell. Biol.23, 4207–4218 (2003). ArticleCAS Google Scholar
Li, J., Moazed, D. & Gygi, S.P. Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation. J. Biol. Chem.277, 49383–49388 (2002). ArticleCAS Google Scholar
Schaft, D. et al. The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation. Nucleic Acids Res.31, 2475–2482 (2003). ArticleCAS Google Scholar
Carrozza, M.J. et al. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell123, 581–592 (2005). ArticleCAS Google Scholar
Keogh, M.C. et al. Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell123, 593–605 (2005). ArticleCAS Google Scholar
Allemand, E., Batsche, E. & Muchardt, C. Splicing, transcription, and chromatin: a menage a trois. Curr. Opin. Genet. Dev.18, 145–151 (2008). ArticleCAS Google Scholar
Sims, R.J. III et al. Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell28, 665–676 (2007). ArticleCAS Google Scholar
de la Mata, M. et al. A slow RNA polymerase II affects alternative splicing in vivo. Mol. Cell12, 525–532 (2003). ArticleCAS Google Scholar
Howe, K.J., Kane, C.M. & Ares, M. Jr. Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae. RNA9, 993–1006 (2003). ArticleCAS Google Scholar
Ren, B. et al. Genome-wide location and function of DNA binding proteins. Science290, 2306–2309 (2000). ArticleCAS Google Scholar
Song, J.S. et al. Model-based analysis of two-color arrays (MA2C). Genome Biol.8, R178 (2007). Article Google Scholar