From the connectome to brain function (original) (raw)

• Bock, D.D. et al. Network anatomy and in vivo physiology of visual cortical neurons. Nature 471, 177–182 (2011).
  Article CAS Google Scholar
• Briggman, K.L. & Bock, D.D. Volume electron microscopy for neuronal circuit reconstruction. Curr. Opin. Neurobiol. 22, 154–161 (2012).
  Article CAS Google Scholar
• Briggman, K.L., Helmstaedter, M. & Denk, W. Wiring specificity in the direction-selectivity circuit of the retina. Nature 471, 183–188 (2011).
  Article CAS Google Scholar
• Kleinfeld, D. et al. Large-scale automated histology in the pursuit of connectomes. J. Neurosci. 31, 16125–16138 (2011).
  Article CAS Google Scholar
• Burrows, M. Monosynaptic connexions between wing stretch receptors and flight motoneurones of the locust. J. Exp. Biol. 62, 189–219 (1975).
  CAS PubMed Google Scholar
• Fentress, J.C. Simpler Networks and Behavior (Sinauer Associates, 1976).
• Getting, P.A., Lennard, P.R. & Hume, R.I. Central pattern generator mediating swimming in Tritonia. I. Identification and synaptic interactions. J. Neurophysiol. 44, 151–164 (1980).
  Article CAS Google Scholar
• Stretton, A.O. & Kravitz, E.A. Neuronal geometry: determination with a technique of intracellular dye injection. Science 162, 132–134 (1968).
  Article CAS Google Scholar
• Remler, M., Selverston, A. & Kennedy, D. Lateral giant fibers of cray fish: location of somata by dye injection. Science 162, 281–283 (1968).
  Article CAS Google Scholar
• Goodman, C.S. Isogenic grasshoppers: genetic variability in the morphology of identified neurons. J. Comp. Neurol. 182, 681–705 (1978).
  Article CAS Google Scholar
• Maynard, E.A. Electron microscopy of the stomatogastric ganglion in the lobster, Homarus americanus. Tissue Cell 3, 137–160 (1971).
  Article CAS Google Scholar
• King, D.G. Organization of crustacean neuropil. I. Patterns of synaptic connections in lobster stomatogastric ganglion. J. Neurocytol. 5, 207–237 (1976).
  Article CAS Google Scholar
• King, D.G. Organization of crustacean neuropil. II. Distribution of synaptic contacts on identified motor neurons in lobster stomatogastric ganglion. J. Neurocytol. 5, 239–266 (1976).
  Article CAS Google Scholar
• White, J.G., Southgate, E., Thomson, J.N. & Brenner, S. The structure of the nervous system of the nematode Caenorhabditis elegans. Phil. Trans. R. Soc. Lond. B 314, 1–340 (1986).
  Article CAS Google Scholar
• Seung, H.S. Reading the book of memory: sparse sampling versus dense mapping of connectomes. Neuron 62, 17–29 (2009).
  Article CAS Google Scholar
• Meinertzhagen, I.A. & Lee, C.H. The genetic analysis of functional connectomics in Drosophila. Adv. Genet. 80, 99–151 (2012).
  Article Google Scholar
• Anderson, J.R. et al. Exploring the retinal connectome. Mol. Vis. 17, 355–379 (2011).
  PubMed PubMed Central Google Scholar
• Lu, J., Tapia, J.C., White, O.L. & Lichtman, J.W. The interscutularis muscle connectome. PLoS Biol. 7, e32 (2009).
  Google Scholar
• Marder, E. & Bucher, D. Understanding circuit dynamics using the stomatogastric nervous system of lobsters and crabs. Annu. Rev. Physiol. 69, 291–316 (2007).
  Article CAS Google Scholar
• Nusbaum, M.P. & Beenhakker, M.P. A small-systems approach to motor pattern generation. Nature 417, 343–350 (2002).
  Article CAS Google Scholar
• Thirumalai, V., Prinz, A.A., Johnson, C.D. & Marder, E. Red pigment concentrating hormone strongly enhances the strength of the feedback to the pyloric rhythm oscillator but has little effect on pyloric rhythm period. J. Neurophysiol. 95, 1762–1770 (2006).
  Article CAS Google Scholar
• Chalfie, M. et al. The neural circuit for touch sensitivity in Caenorhabditis elegans. J. Neurosci. 5, 956–964 (1985).
  Article CAS Google Scholar
• Gutierrez, G.J., O'Leary, T. & Marder, E. Multiple mechanisms switch an electrically coupled, synaptically inhibited neuron between competing rhythmic oscillators. Neuron 77, 845–858 (2013).
  Article CAS Google Scholar
• Sharp, A.A., Skinner, F.K. & Marder, E. Mechanisms of oscillation in dynamic clamp constructed two-cell half-center circuits. J. Neurophysiol. 76, 867–883 (1996).
  Article CAS Google Scholar
• Jang, H. et al. Neuromodulatory state and sex specify alternative behaviors through antagonistic synaptic pathways in C. elegans. Neuron 75, 585–592 (2012).
  Article CAS Google Scholar
• Pereda, A.E. et al. Gap junction-mediated electrical transmission: regulatory mechanisms and plasticity. Biochim. Biophys. Acta 1828, 134–146 (2013).
  Article CAS Google Scholar
• Neyton, J. & Trautmann, A. Physiological modulation of gap junction permeability. J. Exp. Biol. 124, 93–114 (1986).
  Google Scholar
• Guo, Y.M. et al. Imaging dynamic cell-cell junctional coupling in vivo using Trojan-LAMP. Nat. Methods 5, 835–841 (2008).
  Article CAS Google Scholar
• Marder, E. Neuromodulation of neuronal circuits: back to the future. Neuron 76, 1–11 (2012).
  Article CAS Google Scholar
• Macosko, E.Z. et al. A hub-and-spoke circuit drives pheromone attraction and social behaviour in C. elegans. Nature 458, 1171–1175 (2009).
  Article CAS Google Scholar
• Inagaki, H.K. et al. Visualizing neuromodulation in vivo: TANGO-mapping of dopamine signaling reveals appetite control of sugar sensing. Cell 148, 583–595 (2012).
  Article CAS Google Scholar
• Sharp, A.A., O'Neil, M.B., Abbott, L.F. & Marder, E. Dynamic clamp: computer-generated conductances in real neurons. J. Neurophysiol. 69, 992–995 (1993).
  Article CAS Google Scholar
• Kawaguchi, Y. & Kondo, S. Parvalbumin, somatostatin and cholecystokinin as chemical markers for specific GABAergic interneuron types in the rat frontal cortex. J. Neurocytol. 31, 277–287 (2002).
  Article Google Scholar
• Egorov, A.V., Hamam, B.N., Fransen, E., Hasselmo, M.E. & Alonso, A.A. Graded persistent activity in entorhinal cortex neurons. Nature 420, 173–178 (2002).
  Article CAS Google Scholar
• Aston-Jones, G. & Cohen, J.D. An integrative theory of locus coeruleus-norepinephrine function: adaptive gain and optimal performance. Annu. Rev. Neurosci. 28, 403–450 (2005).
  Article CAS Google Scholar
• Zucker, R.S. & Regehr, W.G. Short-term synaptic plasticity. Annu. Rev. Physiol. 64, 355–405 (2002).
  Article CAS Google Scholar
• Masland, R.H. The neuronal organization of the retina. Neuron 76, 266–280 (2012).
  Article CAS Google Scholar
• Grimes, W.N., Zhang, J., Graydon, C.W., Kachar, B. & Diamond, J.S. Retinal parallel processors: more than 100 independent microcircuits operate within a single interneuron. Neuron 65, 873–885 (2010).
  Article CAS Google Scholar
• Hosoya, T., Baccus, S.A. & Meister, M. Dynamic predictive coding by the retina. Nature 436, 71–77 (2005).
  Article CAS Google Scholar
• Farrow, K. et al. Ambient illumination toggles a neuronal circuit switch in the retina and visual perception at cone threshold. Neuron 78, 325–338 (2013).
  Article CAS Google Scholar
• Rivlin-Etzion, M., Wei, W. & Feller, M.B. Visual stimulation reverses the directional preference of direction-selective retinal ganglion cells. Neuron 76, 518–525 (2012).
  Article CAS Google Scholar
• Witkovsky, P. Dopamine and retinal function. Doc. Ophthalmol. 108, 17–40 (2004).
  Article Google Scholar
• Ciocchi, S. et al. Encoding of conditioned fear in central amygdala inhibitory circuits. Nature 468, 277–282 (2010).
  Article CAS Google Scholar
• Marder, E. & Taylor, A.L. Multiple models to capture the variability in biological neurons and networks. Nat. Neurosci. 14, 133–138 (2011).
  Article CAS Google Scholar
• Milo, R. et al. Network motifs: simple building blocks of complex networks. Science 298, 824–827 (2002).
  Article CAS Google Scholar
• Markram, H. The blue brain project. Nat. Rev. Neurosci. 7, 153–160 (2006).
  Article CAS Google Scholar
• Koch, C. & Reid, R.C. Neuroscience: Observatories of the mind. Nature 483, 397–398 (2012).
  Article CAS Google Scholar
• Alivisatos, A.P. et al. The brain activity map project and the challenge of functional connectomics. Neuron 74, 970–974 (2012).
  Article CAS Google Scholar
• Koch, C. Systems biology. Modular biological complexity. Science 337, 531–532 (2012).
  Article CAS Google Scholar
• Varshney, L.R., Chen, B.L., Paniagua, E., Hall, D.H. & Chklovskii, D.B. Structural properties of the Caenorhabditis elegans neuronal network. PLoS Comput. Biol. 7, e1001066 (2011).
  Article CAS Google Scholar