Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase (original) (raw)

References

  1. Mitchell, P. Nature 191, 144–148 (1961).
    Article CAS Google Scholar
  2. Boyer, P.D. Biochim. Biophys. Acta 1140, 215–250 (1993).
    Article CAS Google Scholar
  3. Duncan, T.M., Bulygin, V.V., Zhou, Y., Hutcheon, M.L. & Cross, R.L. Proc. Natl. Acad. Sci. USA 92, 10964–10968 (1995).
    Article CAS Google Scholar
  4. Sabbert, D., Engelbrecht, S. & Junge, W. Nature 381, 623–625 (1996).
    Article CAS Google Scholar
  5. Noji, H., Yasuda, R., Yoshida, M. & Kinosita, K. Nature 386, 299–302 (1997).
    Article CAS Google Scholar
  6. Abrahams, J.P., Leslie, A.G.W., Lutter, L. & Walker, J.E. Nature 370, 621–628 (1994).
    Article CAS Google Scholar
  7. Gibbons, C., Montgomery, M.G., Leslie, A.G.W. & Walker, J.E. Nature Struct. Biol. 7, 1055–1061 (2000).
    Article CAS Google Scholar
  8. Weber, J. & Senior, A.E. Biochim. Biophys. Acta 1319, 19–58 (1997).
    Article CAS Google Scholar
  9. Pänke, O. & Rumberg, B. Biochim. Biophys. Acta 1322, 183–194 (1997).
    Article Google Scholar
  10. Ren, G. & Allison, W.S. Biochim. Biophys. Acta 1458, 221–233 (2000).
    Article CAS Google Scholar
  11. Hara, K.Y. et al. J. Biol. Chem. 275, 14260–14263 (2000).
    Article CAS Google Scholar
  12. Boyer, P.D. Annu. Rev. Biochem. 66, 717–749 (1997).
    Article CAS Google Scholar
  13. Engelbrecht, S. & Junge, W. FEBS Lett. 414, 485–491 (1997).
    Article CAS Google Scholar
  14. Cherepanov, D.A., Mulkidjanian, A.Y. & Junge, W. FEBS Lett. 449, 1–6 (1999).
    Article CAS Google Scholar
  15. Weber, J., Nadanaciva, S. & Senior, A.E. FEBS Lett. 483, 1–5 (2000).
    Article CAS Google Scholar
  16. Oster, G. & Wang, H.Y. Biochim. Biophys. Acta 1458, 482–510 (2000).
    Article CAS Google Scholar
  17. Grubmüller, H., Heymann, B. & Tavan, P. Science 271, 997–999 (1996).
    Article Google Scholar
  18. Izrailev, S., Stepaniants, S., Balsera, M., Oono, Y. & Schulten, K. Biophys. J. 72, 1568–1581 (1997).
    Article CAS Google Scholar
  19. Dunn, S.D. & Futai, M. J. Biol. Chem. 255, 113–118 (1980).
    CAS PubMed Google Scholar
  20. Miwa, K. & Yoshida, M. Proc. Natl. Acad. Sci. USA 86, 6484–6487 (1989).
    Article CAS Google Scholar
  21. Yasuda, R., Noji, H., Yoshida, M., Kinosita, K. & Itoh, H. Nature 410, 898–904 (2001).
    Article CAS Google Scholar
  22. Pänke, O., Cherepanov, D.A., Gumbiowski, K., Engelbrecht, S. & Junge, W. Biophys. J. 81, 1220–1233 (2001).
    Article Google Scholar
  23. Weber, J., Hammond, S.T., Wilke-Mounts, S. & Senior, A.E. Biochemistry 37, 608–614 (1998).
    Article CAS Google Scholar
  24. Menz, R.I., Walker, J.E. & Leslie, A.G.W. Cell 106, 331 (2001).
    Article CAS Google Scholar
  25. Heymann, B. & Grubmüller, H. Chem. Phys. Lett. 303, 1–9 (1999).
    Article CAS Google Scholar
  26. Nadanaciva, S., Weber, J., Wilke-Mounts, S. & Senior, A.E. Biochemistry 38, 15493–15499 (1999).
    Article CAS Google Scholar
  27. Le, N.P. et al. Biochemistry 39, 2778–2783 (2000).
    Article CAS Google Scholar
  28. Nadanaciva, S., Weber, J. & Senior, A.E. Biochemistry 38, 7670–7677 (1999).
    Article CAS Google Scholar
  29. Eichinger, M., Heller, H. & Grubmüller, H. In Workshop on molecular dynamics on parallel computers. (eds Esser, R. et al.) 154–174 (World Scientific, Singapore; 2000).
    Book Google Scholar
  30. Brooks, B.R. et al. J. Comp. Chem. 4, 187–217 (1983).
    Article CAS Google Scholar
  31. Eichinger, M., Grubmüller, H., Heller, H. & Tavan, P. J. Comp. Chem. 18, 1729–1749 (1997).
    Article CAS Google Scholar
  32. Jorgensen, W.L., Chandrasekhar, J. & Madura, J.D. J. Chem. Phys. 79, 926–935 (1983).
    Article CAS Google Scholar
  33. Koradi, R., Billeter, M., & Wüthrich, K. J. Mol. Graphics 14, 51–55 (1996).
    Article CAS Google Scholar
  34. Sayle, R.A. & Milnerwhite, E.J. Trends Biochem. Sci. 20 374–376 (1995).
    Article CAS Google Scholar

Download references